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MK295205.1__AZV01507.1__vBSflM004_118__00118

Bact-Vir

MK295205.1__AZV01507.1__vBSflM004_118__00118

Identity

Accession:
MK295205 ↗
Kingdom:
phage

Quality

59.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Shigella_phage_vB_SflM_004

TaxID: 2500763

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-77
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 38.0 4.72e-01 96.1% 76.6%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 43.0 3.69e-01 70.1% 85.2%
2lsmA00 3.40.5.70 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › DNA packaging chaperone protein FI, C-terminal beta-strand domain 0.54 32.0 3.55e-01 74.0% 75.4%
3n40P04 2.60.40.2400 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C 0.51 41.0 4.22e-01 89.6% 95.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4171257 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.63 44.0 4.34e-01 83.1% 67.1%
4422543 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.63 44.0 4.22e-01 81.8% 63.3%
4230153 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 43.0 4.23e-01 81.8% 67.1%
4297843 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 45.0 4.45e-01 85.7% 76.2%
4248597 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 43.0 4.22e-01 81.8% 69.4%
4138621 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 41.0 4.03e-01 81.8% 65.9%
4591487 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 40.0 4.04e-01 81.8% 68.8%
4421680 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 41.0 4.12e-01 81.8% 71.2%
5017568 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.54 34.0 3.38e-01 100.0% 58.7%
3258814 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 3.64e-01 79.2% 88.6%
3222539 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.53 26.0 3.18e-01 75.3% 94.3%
3502137 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.64e-01 93.5% 92.3%
3617801 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 30.0 2.01e-01 80.5% 12.2%
3595061 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.51 39.0 3.23e-01 83.1% 72.2%
4680191 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.50 42.0 2.67e-01 98.7% 68.6%
3670778 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.50 37.0 3.53e-01 77.9% 67.8%