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MK301608.1__AZU99620.1__SBP1_gp028__00028
Bact-VirMK301608.1__AZU99620.1__SBP1_gp028__00028
Identity
- Accession:
- MK301608 ↗
- Kingdom:
- phage
Quality
79.6
mean pLDDT
Taxonomy
TaxID: 2500581
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-60
Domain cluster:
rep: NC_070780.1__YP_010651107.1__PP428_gp270__00270__D2-75
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gwyB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.65 | 56.0 | 4.41e-01 | 100.0% | 61.7% |
| 5cfjA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.64 | 56.0 | 4.28e-01 | 100.0% | 62.1% |
| 1tr8A01 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.63 | 35.0 | 3.68e-01 | 71.2% | 59.6% |
| 1yqyA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.61 | 47.0 | 3.38e-01 | 89.8% | 57.4% |
| 1ktgA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.61 | 52.0 | 4.08e-01 | 100.0% | 62.0% |
| 1qs1A01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.61 | 48.0 | 3.40e-01 | 89.8% | 58.1% |
| 4dolA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.61 | 41.0 | 3.08e-01 | 71.2% | 26.9% |
| 4xsgB00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.61 | 47.0 | 3.38e-01 | 89.8% | 61.0% |
| 4h03A02 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.60 | 47.0 | 3.36e-01 | 91.5% | 59.4% |
| 1qs1A02 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.60 | 46.0 | 3.36e-01 | 89.8% | 58.9% |
| 3f13B00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.60 | 50.0 | 3.90e-01 | 100.0% | 46.9% |
| 2ghfA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.57 | 41.0 | 3.70e-01 | 100.0% | 52.8% |
| 2xvsA00 | 2.40.50.550 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 41.0 | 3.06e-01 | 79.7% | 81.9% |
| 2j3xA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.57 | 44.0 | 3.10e-01 | 89.8% | 53.2% |
| 6j09A03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.56 | 47.0 | 4.31e-01 | 100.0% | 96.4% |
| 5wtzA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.56 | 42.0 | 3.04e-01 | 89.8% | 56.3% |
| 1h0hB01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 48.0 | 3.61e-01 | 100.0% | 89.3% |
| 2x8xX01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.53 | 47.0 | 4.34e-01 | 100.0% | 84.2% |
| 1vs3A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.53 | 40.0 | 3.20e-01 | 91.5% | 58.3% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 44.0 | 3.63e-01 | 100.0% | 56.5% |
| 4labA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.51 | 38.0 | 2.84e-01 | 91.5% | 27.3% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4964962 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 60.0 | 6.22e-01 | 100.0% | 92.7% |
| 5042402 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.74 | 63.0 | 6.33e-01 | 100.0% | 91.7% |
| 4956395 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.73 | 56.0 | 5.77e-01 | 100.0% | 89.1% |
| 5045021 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.73 | 58.0 | 5.78e-01 | 100.0% | 85.0% |
| 3802388 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.73 | 64.0 | 5.77e-01 | 100.0% | 72.3% |
| 3619212 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.68 | 57.0 | 3.54e-01 | 89.8% | 19.7% |
| 5004416 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 47.0 | 3.87e-01 | 100.0% | 41.0% |
| 3624495 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.68 | 40.0 | 2.46e-01 | 71.2% | 10.1% |
| 5042815 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.67 | 61.0 | 5.48e-01 | 100.0% | 80.0% |
| 1736533 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.67 | 58.0 | 4.41e-01 | 100.0% | 63.3% |
| 5041150 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.66 | 60.0 | 5.66e-01 | 100.0% | 90.0% |
| 3839072 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.66 | 57.0 | 3.92e-01 | 100.0% | 47.6% |
| 4169889 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.65 | 59.0 | 5.55e-01 | 100.0% | 87.1% |
| 4476789 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.65 | 35.0 | 3.64e-01 | 71.2% | 56.4% |
| 3602961 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.64 | 34.0 | 3.88e-01 | 71.2% | 68.9% |
| 5066523 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.64 | 35.0 | 3.93e-01 | 71.2% | 68.9% |
| 4951060 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.63 | 35.0 | 3.43e-01 | 71.2% | 47.7% |
| 3265492 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.61 | 52.0 | 5.05e-01 | 100.0% | 87.7% |
| 4928098 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.61 | 34.0 | 3.73e-01 | 71.2% | 68.9% |
| 4961266 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.60 | 33.0 | 3.72e-01 | 72.9% | 68.9% |
| 3789481 | 239.3.1.0 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain | 0.56 | 46.0 | 3.53e-01 | 100.0% | 72.1% |
| 3625467 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.56 | 46.0 | 3.59e-01 | 100.0% | 85.8% |
| 3451717 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.56 | 48.0 | 4.32e-01 | 100.0% | 70.6% |
| 3747619 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 38.0 | 2.34e-01 | 72.9% | 13.2% |
| 4015935 | 2003.1.2.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N | 0.55 | 45.0 | 2.93e-01 | 94.9% | 83.8% |
| 4298531 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.55 | 46.0 | 3.80e-01 | 100.0% | 80.0% |
| 4942439 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.55 | 47.0 | 3.61e-01 | 100.0% | 73.1% |
| 3927455 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.54 | 46.0 | 3.55e-01 | 100.0% | 42.3% |
| 5041586 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.54 | 48.0 | 3.65e-01 | 100.0% | 60.7% |
| 3951244 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.54 | 45.0 | 3.46e-01 | 100.0% | 58.1% |
| 3652079 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.53 | 44.0 | 3.65e-01 | 100.0% | 49.6% |
| 4958890 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.53 | 41.0 | 3.79e-01 | 89.8% | 65.0% |
| 4966854 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 41.0 | 2.60e-01 | 89.8% | 16.7% |
| 1173463 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.53 | 40.0 | 3.73e-01 | 89.8% | 64.2% |
| 3932485 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.52 | 42.0 | 3.42e-01 | 100.0% | 47.0% |
| 3194003 | 1020.1.1.2 ↗ | extended segments › Ezh2 N-terminal domain › Ezh2 N-terminal domain › Ezh2 N-terminal domain › EZH2_N | 0.52 | 33.0 | 2.61e-01 | 89.8% | 27.7% |
| 4940409 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.52 | 40.0 | 3.74e-01 | 89.8% | 66.3% |
| 3925599 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.51 | 41.0 | 3.16e-01 | 98.3% | 38.6% |
| 2801086 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.51 | 40.0 | 2.54e-01 | 91.5% | 20.6% |
| 5035326 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 38.0 | 3.49e-01 | 89.8% | 66.7% |
| 4931129 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.51 | 38.0 | 3.53e-01 | 88.1% | 65.9% |
| 4969397 | 1.1.1.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 | 0.51 | 44.0 | 3.59e-01 | 100.0% | 53.9% |
| 4282509 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 40.0 | 2.36e-01 | 91.5% | 13.1% |
| 3935948 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.50 | 43.0 | 3.49e-01 | 98.3% | 52.2% |
| 3505537 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.50 | 41.0 | 3.88e-01 | 98.3% | 74.7% |