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MK301608.1__AZU99681.1__SBP1_gp089__00089

Bact-Vir

MK301608.1__AZU99681.1__SBP1_gp089__00089

Identity

Accession:
MK301608 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Electravirus› Vibrio_virus_vB_VspP_SBP1

TaxID: 2500581

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-76
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.63 53.0 4.82e-01 94.6% 76.5%
2fiaB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 47.0 3.76e-01 86.5% 96.2%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 41.0 2.67e-01 74.3% 26.3%
3mz1B01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 47.0 4.22e-01 94.6% 87.7%
1sqhA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 46.0 3.89e-01 93.2% 96.9%
4je0B01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.51e-01 89.2% 84.2%
3fxqA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 43.0 4.01e-01 93.2% 94.1%
7pk0A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 41.0 3.53e-01 86.5% 91.5%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.54 40.0 2.39e-01 83.8% 12.3%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.74e-01 98.6% 94.3%
1r17B01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 44.0 3.43e-01 91.9% 65.4%
5vyqA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.53 36.0 2.84e-01 71.6% 84.2%
1birA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.52 39.0 3.49e-01 79.7% 90.4%
2dhgA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 41.0 4.03e-01 100.0% 81.0%
3fncB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 39.0 3.17e-01 85.1% 94.4%
1s5jA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.52 36.0 2.93e-01 100.0% 35.0%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.51 43.0 3.03e-01 97.3% 74.3%
1ta9B01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 37.0 2.94e-01 77.0% 59.9%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.50 41.0 3.74e-01 91.9% 88.2%
2dyuA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.50 42.0 2.92e-01 98.6% 51.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3967464 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.62 30.0 3.29e-01 95.9% 55.0%
5017022 331.1.1.27 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CBS 0.61 52.0 3.58e-01 100.0% 28.4%
3355067 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.61 39.0 3.55e-01 77.0% 46.7%
3971511 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.58 48.0 4.33e-01 94.6% 86.7%
3987339 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.58 46.0 3.66e-01 93.2% 42.6%
3953675 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.57 43.0 4.55e-01 86.5% 93.8%
3974690 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.57 47.0 4.12e-01 94.6% 80.9%
4046039 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.56 39.0 3.72e-01 93.2% 62.4%
2881380 3484.1.1.0 ↗ a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain 0.56 32.0 3.75e-01 86.5% 90.7%
3742276 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.54 41.0 2.71e-01 83.8% 46.3%
4932330 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.54 45.0 4.35e-01 94.6% 83.5%
3239118 1013.1.1.0 ↗ beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain 0.53 41.0 3.13e-01 85.1% 74.7%
4946587 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 43.0 3.66e-01 93.2% 91.5%
3909868 221.1.1.89 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Il2rg 0.52 40.0 3.43e-01 82.4% 55.0%
3352836 304.20.1.2 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.52 47.0 3.60e-01 100.0% 77.6%
3667166 304.20.1.2 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.52 47.0 3.60e-01 100.0% 77.6%
3840475 304.9.1.104 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_PARP14_2 0.51 39.0 3.76e-01 100.0% 71.1%
4029363 304.20.1.2 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.51 46.0 3.58e-01 100.0% 76.9%
5071251 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.51 44.0 3.76e-01 100.0% 96.0%
4979642 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.51 36.0 3.39e-01 78.4% 79.0%
3233769 304.20.1.2 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.50 45.0 3.45e-01 100.0% 74.1%
3666939 2004.1.1.45 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V 0.50 43.0 2.54e-01 100.0% 71.4%
4954761 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.50 44.0 3.79e-01 100.0% 88.3%