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MK305891.1__QAX92985.1__SEA_GIBSON_39__00039
Bact-VirMK305891.1__QAX92985.1__SEA_GIBSON_39__00039
Identity
- Accession:
- MK305891 ↗
- Kingdom:
- phage
Quality
65.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-58
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14279.13 best | HNH_5 | 35.3 | 1.20e-08 | 82.8% | 73.2% |
| PF01844.30 | HNH | 40.8 | 2.60e-10 | 70.7% | 74.5% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m08A00 | 3.90.540.10 | Alpha Beta › Alpha-Beta Complex › Colicin E7 immunity protein; Chain B, fragment: Endonuclease domain › Colicin/pyocin, DNase domain | 0.77 | 52.0 | 3.96e-01 | 70.7% | 34.4% |
| 5inhA04 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.73 | 58.0 | 3.66e-01 | 86.2% | 43.0% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.66 | 58.0 | 4.33e-01 | 98.3% | 50.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999440 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.83 | 62.0 | 5.39e-01 | 86.2% | 54.1% |
| 4839749 | 3821.1.1.0 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain | 0.82 | 58.0 | 6.48e-01 | 81.0% | 95.6% |
| 4998487 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.82 | 61.0 | 5.11e-01 | 87.9% | 48.4% |
| 3905981 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.79 | 55.0 | 4.15e-01 | 72.4% | 46.9% |
| 5016552 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.78 | 58.0 | 4.64e-01 | 79.3% | 43.6% |
| 3277754 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.77 | 59.0 | 5.51e-01 | 89.7% | 67.1% |
| 5004503 | 378.1.1.20 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 | 0.74 | 62.0 | 4.63e-01 | 89.7% | 53.3% |
| 3307439 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.74 | 67.0 | 5.10e-01 | 96.6% | 50.8% |
| 4941657 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.73 | 60.0 | 5.48e-01 | 87.9% | 68.0% |
| 4922670 | 3820.1.1.6 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI, Cas9_RuvC | 0.73 | 56.0 | 3.98e-01 | 82.8% | 45.6% |
| 4989310 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.72 | 62.0 | 4.22e-01 | 93.1% | 31.2% |
| None | — | 0.72 | 62.0 | 4.57e-01 | 94.8% | 50.3% | |
| 4951302 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 48.0 | 4.67e-01 | 70.7% | 63.1% |
| 4959591 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.70 | 51.0 | 4.91e-01 | 82.8% | 69.2% |
| 4932123 | 377.7.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH | 0.68 | 51.0 | 4.80e-01 | 81.0% | 67.1% |
| 2991844 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.68 | 59.0 | 4.69e-01 | 93.1% | 57.8% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.68 | 53.0 | 4.22e-01 | 82.8% | 60.9% |
| 1144783 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.65 | 56.0 | 4.04e-01 | 94.8% | 34.4% |
D2
medium
residues 59-140