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MK305892.1__QAX93151.1__SEA_REDRAIDER77_100__00100
Bact-VirMK305892.1__QAX93151.1__SEA_REDRAIDER77_100__00100
Identity
- Accession:
- MK305892 ↗
- Kingdom:
- phage
Quality
86.5
mean pLDDT
Taxonomy
TaxID: 2500794
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 275-378
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.67 | 42.0 | 5.02e-01 | 98.1% | 97.0% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.66 | 41.0 | 5.01e-01 | 86.5% | 98.5% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 49.0 | 4.53e-01 | 98.1% | 63.6% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 44.0 | 4.57e-01 | 89.4% | 76.3% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 47.0 | 5.14e-01 | 93.3% | 100.0% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 43.0 | 4.51e-01 | 95.2% | 79.2% |
| 1guxB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 45.0 | 4.12e-01 | 93.3% | 58.2% |
| 4lwsB00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.60 | 33.0 | 3.63e-01 | 96.2% | 64.8% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.60 | 43.0 | 4.81e-01 | 97.1% | 100.0% |
| 2w96A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 44.0 | 4.34e-01 | 90.4% | 72.6% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 40.0 | 4.11e-01 | 72.1% | 74.0% |
| 2o7gA00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 39.0 | 4.24e-01 | 70.2% | 94.3% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 43.0 | 4.26e-01 | 94.2% | 74.8% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 47.0 | 4.39e-01 | 95.2% | 70.7% |
| 3djbA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.57 | 42.0 | 4.40e-01 | 97.1% | 85.4% |
| 3k1zA02 | 1.10.150.720 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase | 0.56 | 43.0 | 4.66e-01 | 89.4% | 100.0% |
| 2i7aA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 43.0 | 3.81e-01 | 96.2% | 56.1% |
| 1xjuA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.55 | 46.0 | 4.10e-01 | 94.2% | 96.8% |
| 2r31A02 | 1.10.3580.10 | Mainly Alpha › Orthogonal Bundle › ATP12-like fold › ATP12 ATPase | 0.55 | 41.0 | 3.50e-01 | 96.2% | 47.6% |
| 3nqwA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 41.0 | 3.49e-01 | 80.8% | 86.5% |
| 1f5qB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 41.0 | 3.83e-01 | 92.3% | 62.3% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.54 | 39.0 | 4.00e-01 | 99.0% | 81.4% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.54 | 45.0 | 4.12e-01 | 92.3% | 70.2% |
| 6gwuD00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.53 | 41.0 | 3.34e-01 | 82.7% | 43.6% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 45.0 | 4.13e-01 | 95.2% | 95.7% |
| 2r7rA02 | 1.20.120.1390 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 37.0 | 3.27e-01 | 71.2% | 93.5% |
| 1zp2A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 36.0 | 3.57e-01 | 89.4% | 63.5% |
| 4qgpB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.53 | 27.0 | 2.75e-01 | 94.2% | 45.8% |
| 2pv4A00 | 1.10.3440.10 | Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like | 0.53 | 43.0 | 3.91e-01 | 90.4% | 97.9% |
| 2pq7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 42.0 | 3.64e-01 | 92.3% | 53.8% |
| 6k93A00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.52 | 42.0 | 3.28e-01 | 98.1% | 38.5% |
| 3fvvA02 | 1.20.1440.100 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function | 0.52 | 36.0 | 4.03e-01 | 97.1% | 98.7% |
| 1q90D02 | 1.10.287.980 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › plastocyanin oxidoreductase | 0.52 | 36.0 | 3.84e-01 | 98.1% | 80.6% |
| 3h9pA00 | 1.10.4200.10 | Mainly Alpha › Orthogonal Bundle › Triphosphoribosyl-dephospho-CoA protein › Triphosphoribosyl-dephospho-CoA protein | 0.52 | 41.0 | 3.29e-01 | 87.5% | 92.5% |
| 3fnbA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.52 | 40.0 | 3.88e-01 | 92.3% | 74.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3534849 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.67 | 50.0 | 4.89e-01 | 93.3% | 71.3% |
| 3345767 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.64 | 47.0 | 4.47e-01 | 94.2% | 64.0% |
| 3598088 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 45.0 | 4.21e-01 | 91.3% | 58.5% |
| 4945647 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.63 | 46.0 | 4.76e-01 | 94.2% | 80.0% |
| 3432597 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.62 | 47.0 | 4.71e-01 | 91.3% | 78.1% |
| 3488467 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.62 | 46.0 | 4.49e-01 | 93.3% | 70.4% |
| 4969272 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.62 | 44.0 | 4.24e-01 | 91.3% | 64.2% |
| 1320273 | 101.1.10.11 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Herp-Cyclin | 0.62 | 45.0 | 4.50e-01 | 93.3% | 74.3% |
| 3593791 | 3069.1.1.0 ↗ | alpha arrays › BART › BART › BART | 0.61 | 35.0 | 3.16e-01 | 100.0% | 42.1% |
| 4944587 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 45.0 | 4.55e-01 | 94.2% | 79.0% |
| 3350996 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 46.0 | 4.62e-01 | 94.2% | 80.0% |
| 4273747 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.59 | 41.0 | 3.68e-01 | 89.4% | 50.0% |
| 3814488 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.59 | 44.0 | 4.37e-01 | 91.3% | 75.5% |
| 3937336 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.59 | 45.0 | 4.29e-01 | 89.4% | 70.0% |
| 3608709 | 101.1.10.15 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB_C_1 | 0.58 | 42.0 | 4.07e-01 | 92.3% | 65.8% |
| 5065286 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.57 | 40.0 | 3.91e-01 | 73.1% | 93.9% |
| 4986197 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 37.0 | 3.96e-01 | 83.7% | 77.8% |
| 3600676 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 39.0 | 3.91e-01 | 90.4% | 71.8% |
| 5078113 | 195.1.1.0 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like | 0.54 | 44.0 | 4.11e-01 | 88.5% | 79.2% |
| 4522412 | 131.2.1.7 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD | 0.54 | 41.0 | 3.15e-01 | 83.7% | 58.1% |
| 4600685 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.54 | 45.0 | 4.17e-01 | 94.2% | 71.4% |
| 3728766 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.53 | 41.0 | 3.68e-01 | 89.4% | 58.0% |
| 4972252 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.53 | 44.0 | 4.04e-01 | 92.3% | 73.6% |
| 4088068 | 131.2.1.5 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD, PF27444 | 0.53 | 43.0 | 3.14e-01 | 90.4% | 37.4% |
| 3506632 | 109.4.1.471 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC | 0.53 | 42.0 | 2.83e-01 | 86.5% | 72.7% |
| 3710139 | 604.13.1.0 ↗ | alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like | 0.52 | 36.0 | 3.45e-01 | 73.1% | 94.4% |
| 4013425 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.52 | 36.0 | 3.16e-01 | 72.1% | 93.1% |
| 3742544 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.51 | 36.0 | 3.63e-01 | 74.0% | 97.3% |
| 5076317 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.51 | 42.0 | 3.92e-01 | 90.4% | 80.0% |
| 3492848 | 193.1.1.21 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › DUF5745 | 0.50 | 38.0 | 3.79e-01 | 78.8% | 79.0% |
D2
medium
residues 23-75_160-241
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06067.17 best | DUF932 | 42.1 | 1.20e-10 | 87.4% | 34.4% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.58 | 25.0 | 3.53e-01 | 74.8% | 84.4% |
| 7x7zA01 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.56 | 42.0 | 4.24e-01 | 99.3% | 77.0% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.54 | 25.0 | 3.39e-01 | 74.1% | 86.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4017102 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.59 | 36.0 | 3.80e-01 | 77.0% | 64.8% |
| 4838879 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.55 | 30.0 | 3.72e-01 | 94.8% | 87.5% |
| 4301136 | 814.1.1.2 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase | 0.53 | 34.0 | 3.16e-01 | 98.5% | 51.2% |
| 3701306 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.52 | 40.0 | 3.44e-01 | 100.0% | 51.9% |
| 3639264 | 5.1.4.39 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 | 0.51 | 40.0 | 2.75e-01 | 82.2% | 80.8% |
| 3626881 | 5084.5.1.33 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel | 0.51 | 42.0 | 3.21e-01 | 100.0% | 39.7% |
| 3515197 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.50 | 38.0 | 3.53e-01 | 78.5% | 73.5% |
D3
medium
residues 76-159
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4epcA01 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 32.0 | 3.32e-01 | 76.2% | 46.9% |
| 1fwxA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 36.0 | 2.30e-01 | 94.0% | 13.1% |
| 1wiiA01 | 2.20.25.190 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 29.0 | 3.24e-01 | 79.8% | 72.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3970658 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.69 | 29.0 | 3.05e-01 | 70.2% | 41.3% |
| 3923813 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 27.0 | 2.98e-01 | 75.0% | 50.8% |
| 5033075 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 27.0 | 3.19e-01 | 76.2% | 63.6% |
| 3846830 | 10.1.1.8 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY | 0.55 | 31.0 | 2.43e-01 | 91.7% | 24.9% |
| 5025590 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 41.0 | 3.79e-01 | 84.5% | 96.5% |
| 3341523 | 5.1.8.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › WD40 | 0.53 | 30.0 | 2.71e-01 | 84.5% | 39.1% |
| 3198568 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.51 | 41.0 | 3.59e-01 | 90.5% | 58.5% |