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MK308677.1__QAX96977.1__X__00033

Bact-Vir

MK308677.1__QAX96977.1__X__00033

Identity

Accession:
MK308677 ↗
Kingdom:
phage

Quality

55.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VmeM-Yong_MS32

TaxID: 2500765

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 276-426
PDB
Domain cluster: rep: AP014693.1__BAQ02721.2__X__00203__D161-315
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zheA02 1.25.40.760 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 45.0 4.02e-01 70.9% 70.0%
2pihA00 1.20.1500.10 Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like 0.64 33.0 3.59e-01 100.0% 59.3%
3ubkB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 45.0 4.84e-01 80.8% 86.4%
2w3cA02 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 45.0 3.65e-01 72.8% 42.0%
2h7oA01 1.20.120.1330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain 0.61 41.0 4.52e-01 91.4% 83.7%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.60 30.0 3.20e-01 98.7% 53.5%
3u66A00 1.25.40.590 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU 0.58 40.0 3.88e-01 95.4% 62.5%
1txuA02 1.20.1050.80 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain 0.58 46.0 4.54e-01 100.0% 78.8%
3peuB00 1.25.40.510 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › GLE1-like 0.58 49.0 3.93e-01 91.4% 82.0%
4dvgB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 45.0 3.62e-01 84.8% 48.5%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 44.0 3.62e-01 82.8% 53.4%
2cmrA00 1.20.58.1860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 41.0 3.86e-01 78.8% 93.8%
5ejrA01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.52 43.0 3.91e-01 88.1% 66.2%
3ihvA03 1.25.40.900 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 39.0 4.03e-01 80.1% 100.0%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.51 38.0 3.46e-01 76.8% 65.3%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.51 29.0 3.54e-01 70.2% 88.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3935671 109.4.1.431 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERK-JNK_inhib 0.62 51.0 4.70e-01 97.4% 67.7%
3735209 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 47.0 3.85e-01 81.5% 76.0%
4204476 140.1.1.5 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 0.60 40.0 3.53e-01 76.8% 45.3%
3393609 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 40.0 4.37e-01 97.4% 81.6%
3174383 109.24.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_C 0.57 43.0 4.34e-01 78.8% 89.3%
2439594 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 45.0 4.13e-01 90.1% 63.7%
3737870 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 44.0 3.69e-01 85.4% 75.5%
3753326 109.4.1.1653 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39, TPR_8 0.54 49.0 3.28e-01 100.0% 46.6%
3603138 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 40.0 4.29e-01 77.5% 93.1%
3853421 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 4.46e-01 96.0% 82.7%
3398732 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 46.0 3.80e-01 92.1% 77.5%
3411410 109.4.1.1750 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27600, PF27601, PF27635 0.53 46.0 3.22e-01 96.0% 48.7%
4479462 109.4.1.179 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nro1 0.52 44.0 4.09e-01 94.0% 77.0%
3579611 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.52 43.0 3.90e-01 88.7% 74.0%
3613544 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 3.77e-01 94.0% 61.4%
3679178 109.4.1.1242 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_RRP12_N 0.51 44.0 3.66e-01 94.0% 63.7%
3278268 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.51 38.0 3.69e-01 96.0% 68.6%
3610895 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 3.77e-01 96.7% 84.0%
3589572 604.39.1.22 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Trep_Strep 0.51 39.0 3.76e-01 84.1% 95.1%
3854336 109.4.1.523 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARMH2 0.50 43.0 3.77e-01 93.4% 78.5%