←Back to structures
MK308677.1__QAX97022.1__X__00078
Bact-VirMK308677.1__QAX97022.1__X__00078
Identity
- Accession:
- MK308677 ↗
- Kingdom:
- phage
Quality
77.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-117
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 36.0 | 3.57e-01 | 71.7% | 56.7% |
| 2yxlA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.59 | 53.0 | 4.58e-01 | 99.0% | 75.7% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.59 | 53.0 | 4.73e-01 | 99.0% | 84.1% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.59 | 23.0 | 3.46e-01 | 90.9% | 91.9% |
| 2qlvB02 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 23.0 | 3.64e-01 | 100.0% | 100.0% |
| 6kbyA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 40.0 | 2.75e-01 | 80.8% | 89.2% |
| 6d2qA02 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.52 | 36.0 | 3.57e-01 | 93.9% | 67.3% |
| 6rzqA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.52 | 34.0 | 3.60e-01 | 84.8% | 76.5% |
| 5umbA02 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.51 | 33.0 | 3.68e-01 | 83.8% | 86.7% |
| 3d2fA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.51 | 33.0 | 3.53e-01 | 84.8% | 76.2% |
| 2vmaA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.51 | 42.0 | 3.94e-01 | 90.9% | 82.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3879901 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.61 | 49.0 | 3.87e-01 | 86.9% | 82.0% |
| 4600685 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.59 | 52.0 | 4.62e-01 | 97.0% | 81.4% |
| 5032176 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.58 | 27.0 | 3.36e-01 | 82.8% | 71.7% |
| 3696798 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.57 | 41.0 | 2.97e-01 | 85.9% | 27.9% |
| 3936120 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.56 | 43.0 | 3.02e-01 | 82.8% | 68.1% |
| 4992293 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.55 | 44.0 | 3.55e-01 | 88.9% | 83.7% |
| 3542800 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.55 | 41.0 | 3.06e-01 | 78.8% | 40.8% |
| 3747930 | 6006.1.1.4 ↗ | extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF28678 | 0.54 | 34.0 | 3.76e-01 | 100.0% | 78.8% |
| 3839204 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.54 | 43.0 | 3.53e-01 | 89.9% | 47.2% |
| 3588630 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 46.0 | 3.68e-01 | 96.0% | 92.7% |
| 4368958 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.52 | 45.0 | 3.81e-01 | 92.9% | 61.3% |
| 3890108 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.52 | 44.0 | 4.33e-01 | 100.0% | 84.5% |
| 5047947 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 42.0 | 3.20e-01 | 89.9% | 81.6% |
| 3406884 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 2.90e-01 | 78.8% | 41.6% |
| 4982068 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.52 | 43.0 | 3.86e-01 | 93.9% | 73.8% |
| 3468311 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.51 | 37.0 | 2.58e-01 | 77.8% | 73.6% |
| 3645661 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.50 | 35.0 | 2.38e-01 | 71.7% | 59.5% |