←Back to structures
MK308677.1__QAX97045.1__X__00101
Bact-VirMK308677.1__QAX97045.1__X__00101
Identity
- Accession:
- MK308677 ↗
- Kingdom:
- phage
Quality
79.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 42-106
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ibyD02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 56.0 | 5.13e-01 | 73.8% | 85.7% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 55.0 | 5.21e-01 | 100.0% | 64.1% |
| 1tc3C00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 48.0 | 5.30e-01 | 96.9% | 84.3% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 48.0 | 5.18e-01 | 100.0% | 80.0% |
| 2oi8A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.70 | 61.0 | 4.27e-01 | 96.9% | 45.8% |
| 5lbmA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.68 | 44.0 | 4.06e-01 | 70.8% | 51.8% |
| 1ufvA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.67 | 60.0 | 5.21e-01 | 100.0% | 89.9% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.65 | 50.0 | 4.85e-01 | 100.0% | 76.1% |
| 1ldjA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.64 | 54.0 | 4.59e-01 | 98.5% | 67.0% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.63 | 53.0 | 4.52e-01 | 96.9% | 87.5% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.62 | 51.0 | 4.53e-01 | 100.0% | 61.9% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.61 | 54.0 | 4.43e-01 | 100.0% | 89.3% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 40.0 | 3.54e-01 | 80.0% | 44.8% |
| 3juiA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 50.0 | 3.80e-01 | 96.9% | 39.1% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 53.0 | 4.01e-01 | 100.0% | 44.6% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 39.0 | 3.96e-01 | 92.3% | 67.7% |
| 2vk9A04 | 1.10.274.80 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.59 | 48.0 | 4.18e-01 | 92.3% | 57.7% |
| 4gbjC02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.59 | 51.0 | 4.10e-01 | 100.0% | 83.0% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.59 | 40.0 | 4.62e-01 | 76.9% | 97.9% |
| 1xdpA01 | 1.20.58.310 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Polyphosphate kinase N-terminal domain | 0.58 | 49.0 | 4.24e-01 | 95.4% | 81.0% |
| 3ezuA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 45.0 | 3.30e-01 | 84.6% | 86.8% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.58 | 49.0 | 4.18e-01 | 93.8% | 62.3% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.58 | 40.0 | 3.59e-01 | 73.8% | 66.7% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 41.0 | 4.04e-01 | 76.9% | 97.2% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 44.0 | 3.71e-01 | 89.2% | 48.7% |
| 1vluA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 46.0 | 3.15e-01 | 95.4% | 93.6% |
| 2v9kA01 | 1.10.10.2050 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 38.0 | 4.15e-01 | 86.2% | 100.0% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 48.0 | 4.55e-01 | 100.0% | 97.4% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 43.0 | 3.65e-01 | 89.2% | 58.0% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.54 | 44.0 | 4.21e-01 | 92.3% | 80.5% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.53 | 45.0 | 3.68e-01 | 100.0% | 74.6% |
| 1pixA03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 42.0 | 2.74e-01 | 87.7% | 37.1% |
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 4.15e-01 | 96.9% | 96.6% |
| 4iv6B01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.52 | 43.0 | 3.73e-01 | 100.0% | 62.1% |
| 3fnrA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.52 | 47.0 | 3.60e-01 | 100.0% | 82.8% |
| 2fqxA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 45.0 | 3.31e-01 | 100.0% | 87.0% |
| 4izzB02 | 1.10.10.1680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain | 0.51 | 39.0 | 3.91e-01 | 100.0% | 77.9% |
| 6hxlB01 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.51 | 43.0 | 3.57e-01 | 98.5% | 92.6% |
| 3zssA02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 38.0 | 3.69e-01 | 87.7% | 84.8% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4933758 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 56.0 | 6.58e-01 | 93.8% | 100.0% |
| 3248091 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.80 | 74.0 | 6.72e-01 | 100.0% | 76.5% |
| 1566530 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.80 | 72.0 | 6.70e-01 | 100.0% | 82.7% |
| 4501343 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.79 | 63.0 | 6.71e-01 | 98.5% | 100.0% |
| 5001603 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.72 | 64.0 | 5.75e-01 | 100.0% | 84.4% |
| 4817370 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.71 | 63.0 | 4.70e-01 | 98.5% | 43.8% |
| 3467351 | 109.4.1.1455 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27814 | 0.70 | 63.0 | 4.18e-01 | 100.0% | 26.5% |
| 4992268 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.69 | 60.0 | 3.94e-01 | 95.4% | 23.8% |
| 3556888 | 109.4.1.27 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 | 0.68 | 55.0 | 4.12e-01 | 100.0% | 34.3% |
| 3255571 | 109.4.1.27 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 | 0.67 | 52.0 | 3.87e-01 | 100.0% | 31.1% |
| 3627829 | 3198.1.1.1 ↗ | alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA | 0.67 | 55.0 | 4.46e-01 | 90.8% | 51.2% |
| 3874666 | 101.1.1.317 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF27073 | 0.66 | 59.0 | 5.64e-01 | 100.0% | 88.0% |
| 3939020 | 3731.1.1.0 ↗ | a+b two layers › Uncharacterized protein PA1075 › Uncharacterized protein PA1075 › Uncharacterized protein PA1075 | 0.66 | 49.0 | 4.46e-01 | 78.5% | 64.7% |
| 2036845 | 3546.1.1.1 ↗ | alpha arrays › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Pex14_N | 0.65 | 46.0 | 4.59e-01 | 98.5% | 71.4% |
| 4025064 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.64 | 43.0 | 4.39e-01 | 75.4% | 70.8% |
| 3783873 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.63 | 42.0 | 3.30e-01 | 70.8% | 33.3% |
| 4955750 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.62 | 39.0 | 3.80e-01 | 78.5% | 56.0% |
| 3355139 | 109.52.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › FRIGIDA flowering-time regulator › FRIGIDA flowering-time regulator › Frigida | 0.61 | 48.0 | 3.24e-01 | 89.2% | 24.0% |
| 5061727 | 632.23.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I | 0.61 | 39.0 | 3.98e-01 | 73.8% | 66.2% |
| 3278996 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 55.0 | 4.72e-01 | 100.0% | 84.0% |
| 5045531 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.60 | 48.0 | 4.46e-01 | 89.2% | 78.8% |
| 3506838 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.60 | 43.0 | 3.79e-01 | 75.4% | 51.6% |
| 5061758 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.60 | 38.0 | 3.65e-01 | 78.5% | 56.0% |
| 3499018 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 49.0 | 4.28e-01 | 89.2% | 75.8% |
| 4257452 | 7014.1.1.0 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain | 0.59 | 51.0 | 4.33e-01 | 98.5% | 68.2% |
| 5061725 | 632.23.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I | 0.59 | 40.0 | 3.74e-01 | 70.8% | 57.5% |
| 4554328 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.59 | 48.0 | 4.42e-01 | 93.8% | 84.1% |
| 5058632 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.58 | 39.0 | 3.87e-01 | 70.8% | 65.7% |
| 3830141 | 188.1.1.5 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Tcp11 | 0.58 | 52.0 | 3.45e-01 | 100.0% | 35.7% |
| 3692149 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.58 | 48.0 | 3.51e-01 | 100.0% | 82.0% |
| 4132205 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.56 | 45.0 | 3.92e-01 | 95.4% | 64.5% |
| 3507250 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.55 | 47.0 | 4.02e-01 | 93.8% | 74.3% |
| 3724867 | 192.15.1.1 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › VPS28 | 0.55 | 46.0 | 4.06e-01 | 95.4% | 69.0% |
| 3603627 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.54 | 37.0 | 3.61e-01 | 73.8% | 70.7% |
| 3701020 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.53 | 46.0 | 4.29e-01 | 93.8% | 86.3% |
| 3463858 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.53 | 42.0 | 3.67e-01 | 86.2% | 70.0% |
| 5059280 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.51 | 40.0 | 4.14e-01 | 83.1% | 88.3% |
| 3730592 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.51 | 43.0 | 2.81e-01 | 96.9% | 51.1% |
| 3932692 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.51 | 40.0 | 3.64e-01 | 87.7% | 85.6% |
| 3512471 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.51 | 44.0 | 3.87e-01 | 98.5% | 80.0% |
| 4982048 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.50 | 39.0 | 3.60e-01 | 81.5% | 66.3% |
| 5016657 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.50 | 39.0 | 3.79e-01 | 81.5% | 75.7% |