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MK308677.1QAX97060.1X__00116

Bact-Vir

MK308677.1__QAX97060.1__X__00116

Identity

Accession:: MK308677 ↗
Kingdom:: phage

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VmeM-Yong_MS32

TaxID: 2500765

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50

PDB

Domain cluster: representative

D2 medium residues 177-245

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23806.2 best	Phage_TTP_14	55.1	1.10e-14	100.0%	23.6%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2d7vB00	3.30.300.20	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain	0.53	35.0	2.82e-01	79.7%	31.4%
1ohgA01	3.30.2400.10	Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5	0.51	36.0	2.92e-01	76.8%	38.4%
1lqlA02	3.30.300.20	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain	0.51	34.0	3.08e-01	79.7%	46.6%
2obdA02	3.15.10.10	Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1	0.51	40.0	2.99e-01	88.4%	34.9%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1125236	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.54	40.0	3.56e-01	82.6%	67.9%
4663376	3593.1.1.1 ↗	a+b complex topology › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › CagA_N	0.54	34.0	2.11e-01	92.8%	11.3%
3207693	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.54	42.0	3.44e-01	87.0%	58.5%
4324097	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.52	40.0	3.64e-01	85.5%	68.0%
4124823	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.52	38.0	3.38e-01	79.7%	66.7%
4961086	282.1.1.1 ↗	a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS	0.52	39.0	3.09e-01	85.5%	89.6%
4220790	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.51	44.0	3.79e-01	100.0%	68.7%
1936501	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.51	39.0	3.46e-01	87.0%	65.2%
4493293	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.51	39.0	3.48e-01	88.4%	69.1%
4061385	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.51	39.0	3.46e-01	85.5%	67.6%
2063288	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.51	39.0	3.06e-01	87.0%	42.4%
3608292	304.25.1.0 ↗	a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain	0.51	32.0	3.11e-01	79.7%	53.8%
4600281	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.51	39.0	3.49e-01	89.9%	68.8%
4088621	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.51	38.0	3.43e-01	85.5%	67.6%
4808076	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.50	38.0	3.42e-01	85.5%	69.5%