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MK308677.1__QAX97064.1__X__00120

Bact-Vir

MK308677.1__QAX97064.1__X__00120

Identity

Accession:
MK308677 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VmeM-Yong_MS32

TaxID: 2500765

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-112
PDB
Domain cluster: rep: MK774614.2__QDB70404.1__CF8_0235__00235__D18-119
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.68 55.0 5.42e-01 87.2% 83.3%
3a2eA00 3.30.430.20 Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif 0.67 54.0 4.81e-01 87.2% 84.3%
3ktnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.66 42.0 2.75e-01 78.2% 15.0%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.65 54.0 5.14e-01 91.0% 80.2%
1y4uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.64 48.0 3.54e-01 79.5% 32.0%
3mi6B03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 45.0 4.07e-01 75.6% 98.1%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 41.0 3.69e-01 75.6% 47.8%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 41.0 3.06e-01 73.1% 79.3%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 40.0 3.50e-01 100.0% 46.2%
6ll8A02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.58 44.0 3.91e-01 84.6% 56.7%
1c44A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.57 44.0 3.81e-01 91.0% 52.8%
7qprA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 41.0 3.40e-01 74.4% 53.3%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 43.0 3.10e-01 80.8% 37.9%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.56 40.0 3.36e-01 88.5% 43.0%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 45.0 3.82e-01 88.5% 59.7%
4hrzB00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 48.0 4.22e-01 100.0% 74.0%
2yfoA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 40.0 3.77e-01 75.6% 97.9%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 38.0 3.44e-01 70.5% 88.2%
3vx8A02 3.40.140.70 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain 0.55 47.0 3.74e-01 94.9% 48.8%
1qw9A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 3.32e-01 75.6% 88.0%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 45.0 3.03e-01 92.3% 47.3%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 35.0 3.43e-01 84.6% 59.8%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 44.0 2.92e-01 91.0% 47.2%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 32.0 2.72e-01 70.5% 36.4%
2y2wD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 40.0 3.41e-01 83.3% 50.4%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 35.0 2.80e-01 70.5% 50.0%
3k6kA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 2.73e-01 85.9% 22.6%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 38.0 3.33e-01 79.5% 57.0%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4623684 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.76 57.0 4.64e-01 79.5% 59.3%
4592207 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 55.0 4.45e-01 79.5% 57.2%
2388815 5.1.4.292 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CAF1C_H4-bd, Beta-prop_EIPR1 0.72 34.0 3.35e-01 70.5% 42.2%
4583308 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 55.0 4.22e-01 82.1% 50.0%
4247396 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.71 53.0 4.10e-01 79.5% 48.8%
3373588 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.69 59.0 5.11e-01 93.6% 78.3%
3505546 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.69 55.0 5.02e-01 84.6% 82.0%
4932677 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.69 51.0 4.34e-01 76.9% 58.3%
3354935 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.69 56.0 5.03e-01 87.2% 87.6%
119315 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.67 54.0 4.81e-01 87.2% 84.3%
4927830 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.66 46.0 4.06e-01 73.1% 63.2%
4238947 304.8.1.65 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT, PF27446 0.65 49.0 3.40e-01 79.5% 32.2%
3652660 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.65 50.0 3.55e-01 84.6% 64.1%
3998954 223.2.1.37 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.64 50.0 4.21e-01 85.9% 50.0%
3241603 223.2.1.37 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.64 50.0 3.88e-01 85.9% 39.4%
3647427 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.63 43.0 3.60e-01 84.6% 42.3%
4957627 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.63 44.0 3.86e-01 73.1% 60.9%
3617983 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 40.0 2.44e-01 83.3% 12.2%
4030162 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.63 48.0 2.71e-01 80.8% 66.6%
3937193 223.2.1.37 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.62 47.0 3.67e-01 82.1% 36.6%
4945033 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 44.0 3.72e-01 83.3% 45.4%
3625217 223.2.1.37 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.61 48.0 3.57e-01 87.2% 33.5%
4947810 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 42.0 3.66e-01 83.3% 46.7%
3264506 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.60 46.0 3.87e-01 88.5% 48.1%
3970362 10.12.1.128 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF6016 0.60 42.0 3.46e-01 74.4% 77.3%
3703112 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 44.0 3.86e-01 85.9% 51.7%
3849982 109.6.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.59 44.0 2.74e-01 80.8% 54.9%
4011346 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.58 42.0 4.08e-01 75.6% 70.6%
5065294 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.57 46.0 3.54e-01 85.9% 96.5%
3194338 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 51.0 3.84e-01 100.0% 74.7%
3496629 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.56 48.0 3.74e-01 94.9% 46.5%
3989572 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.56 44.0 3.64e-01 88.5% 54.4%
4017879 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.55 40.0 3.50e-01 79.5% 61.0%
3927846 109.4.1.1948 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle 0.54 46.0 3.33e-01 100.0% 94.8%
3958008 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 40.0 3.50e-01 84.6% 83.1%
3640668 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.53 37.0 3.09e-01 73.1% 52.8%
4928954 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.53 45.0 3.91e-01 98.7% 85.4%
3279448 9.1.1.17 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.53 39.0 3.28e-01 78.2% 50.4%
3690327 4099.1.1.2 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.52 36.0 3.32e-01 100.0% 52.7%
3987311 7579.1.1.27 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 0.52 43.0 2.89e-01 92.3% 48.9%
4130033 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 45.0 2.88e-01 98.7% 20.0%
4243367 3561.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.51 45.0 2.78e-01 94.9% 37.4%
4123847 7579.1.1.27 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 0.51 44.0 2.92e-01 96.2% 36.3%
4022543 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.50 42.0 3.04e-01 92.3% 80.9%
1406320 896.1.1.3 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.50 34.0 3.40e-01 70.5% 96.3%