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MK308677.1__QAX97115.1__X__00171

Bact-Vir

MK308677.1__QAX97115.1__X__00171

Identity

Accession:
MK308677 ↗
Kingdom:
phage

Quality

46.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VmeM-Yong_MS32

TaxID: 2500765

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-241
PDB
Domain cluster: rep: IMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003128__D2-210
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13385.14 best Laminin_G_3 34.9 2.30e-08 80.3% 72.2%
D2 high residues 480-586
PDB
D3 high residues 634-771
PDB
D4 medium residues 824-845_859-935
PDB
D5 medium residues 1248-1355
PDB
D6 medium residues 1579-1668
PDB
D7 medium residues 1680-1785
PDB
Domain cluster: rep: MW273926.1__QPZ53723.1__HTVC204P_gp37__00037__D11-105
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mtmA01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 50.0 5.24e-01 100.0% 81.2%
3kl0D01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 43.0 4.34e-01 100.0% 65.1%
1ymmE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 4.77e-01 98.1% 82.1%
2mizA00 2.60.40.2900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 51.0 4.59e-01 100.0% 78.2%
1fnfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 4.21e-01 100.0% 80.9%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.58 47.0 4.74e-01 100.0% 87.5%
3alxC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 4.46e-01 97.2% 84.5%
7ok5A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 4.23e-01 99.1% 85.2%
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 51.0 4.16e-01 100.0% 89.8%
2fboJ02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.61e-01 99.1% 85.8%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 36.0 3.88e-01 99.1% 76.7%
1d7bA00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.56 48.0 4.10e-01 99.1% 68.1%
3bvxA05 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 36.0 3.85e-01 100.0% 74.0%
1hkfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 4.37e-01 95.3% 84.3%
8begA03 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 4.09e-01 100.0% 64.4%
3u7vA02 2.60.220.20 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › putative beta-Galactosidase from caulobacter crescentus 0.55 36.0 3.32e-01 98.1% 49.3%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 4.24e-01 93.4% 96.1%
2gy5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.95e-01 99.1% 82.2%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 40.0 4.39e-01 100.0% 98.8%
4qi3A00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.53 46.0 3.80e-01 100.0% 62.8%
3b4nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.87e-01 99.1% 83.0%
2i2lB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 32.0 3.78e-01 85.8% 91.2%
5z6pA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.53 46.0 3.97e-01 100.0% 94.9%
4ofqA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.98e-01 100.0% 64.5%
1miqA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 36.0 3.30e-01 72.6% 96.7%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 38.0 4.19e-01 99.1% 100.0%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.80e-01 94.3% 70.7%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.75e-01 98.1% 81.7%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 36.0 3.61e-01 72.6% 100.0%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.52 38.0 3.40e-01 79.2% 91.1%
6mfaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 26.0 2.95e-01 74.5% 63.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2880331 12.1.1.29 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_30C 0.66 42.0 4.42e-01 100.0% 70.4%
3909007 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 47.0 4.70e-01 95.3% 81.8%
3221010 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.59 52.0 4.75e-01 100.0% 79.3%
3917408 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 4.50e-01 97.2% 84.8%
3753600 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.57 40.0 4.28e-01 99.1% 86.7%
1101 10.1.1.18 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sialidase 0.57 51.0 4.16e-01 100.0% 89.8%
3849405 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.06e-01 97.2% 65.7%
3987554 10.1.1.18 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sialidase 0.55 49.0 4.00e-01 100.0% 86.5%
3554576 4081.1.1.7 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I 0.55 42.0 2.89e-01 100.0% 22.0%
5055040 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.54 44.0 4.67e-01 100.0% 98.9%
1790393 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 39.0 4.32e-01 100.0% 98.8%
3887649 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.57e-01 100.0% 62.6%
3861624 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.54 41.0 3.93e-01 100.0% 70.4%
3505097 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.53 37.0 4.06e-01 97.2% 89.4%
5064207 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 46.0 4.72e-01 100.0% 98.0%
3270396 12.1.1.25 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Fucosidase_C 0.53 37.0 3.87e-01 99.1% 81.1%
3893039 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.53 44.0 3.87e-01 92.5% 92.5%
None — 0.53 46.0 3.43e-01 100.0% 99.3%
3386975 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 47.0 4.64e-01 100.0% 97.4%
3275765 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 35.0 3.53e-01 100.0% 68.2%
4148656 10.1.1.74 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF30275 0.51 45.0 3.39e-01 100.0% 92.1%
3949068 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.51 46.0 4.23e-01 100.0% 82.1%
3522661 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.51 41.0 3.89e-01 99.1% 71.1%
3625353 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 43.0 3.85e-01 95.3% 98.7%
3929255 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.50 43.0 3.91e-01 100.0% 69.0%
5056892 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 45.0 4.36e-01 100.0% 97.5%
3971757 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 44.0 4.31e-01 100.0% 95.0%
D8 medium residues 1786-1893
PDB
Domain cluster: rep: KM983329.1__AJA42681.1__phiCT9441A_69__00068__D88-182
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24299.2 best DUF7483 59.1 6.00e-16 100.0% 31.7%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mtmA01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 52.0 5.51e-01 100.0% 91.7%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.63 44.0 2.84e-01 100.0% 15.5%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 35.0 4.29e-01 80.6% 100.0%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 47.0 4.31e-01 100.0% 67.1%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 37.0 4.02e-01 98.1% 82.6%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.46e-01 93.5% 86.8%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 4.48e-01 99.1% 78.5%
3ne5C02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.55 46.0 4.76e-01 96.3% 95.1%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 36.0 3.88e-01 96.3% 78.9%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.55 39.0 3.95e-01 100.0% 75.2%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.54 44.0 4.47e-01 97.2% 90.4%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 4.33e-01 97.2% 92.6%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.56e-01 88.0% 85.2%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.30e-01 98.1% 88.7%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 37.0 4.24e-01 90.7% 100.0%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.52 47.0 4.27e-01 97.2% 90.8%
2x8kA03 2.60.120.860 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 4.50e-01 96.3% 100.0%
1yq5A00 2.60.120.670 Mainly Beta › Sandwich › Jelly Rolls › Minor capsid protein. 0.52 46.0 4.21e-01 97.2% 95.1%
3kmhA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 46.0 3.72e-01 100.0% 56.4%
3ebrA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 38.0 3.38e-01 100.0% 53.2%
1oq1B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.66e-01 100.0% 83.6%
3b4nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.72e-01 99.1% 84.1%
3ideA02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.52 46.0 4.18e-01 97.2% 92.3%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.93e-01 99.1% 98.8%
3a21A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 4.41e-01 100.0% 99.0%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.51 40.0 3.63e-01 99.1% 61.6%
2dy1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 37.0 3.90e-01 95.4% 87.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1300220 12.1.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Collagen_bind_2 0.62 40.0 3.99e-01 99.1% 62.1%
3270597 12.1.1.44 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_5_C 0.60 41.0 4.46e-01 99.1% 85.4%
4028543 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.60 39.0 4.58e-01 97.2% 96.0%
2527699 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.58 41.0 3.39e-01 100.0% 39.7%
5030085 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 52.0 4.55e-01 100.0% 69.7%
3964292 1.1.13.38 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_BR0599 0.56 41.0 4.14e-01 96.3% 76.4%
1714453 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.56 43.0 4.62e-01 97.2% 95.7%
3768347 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.56 34.0 4.06e-01 74.1% 100.0%
3505366 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 38.0 2.93e-01 72.2% 96.2%
5035593 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 41.0 4.20e-01 100.0% 85.7%
4220126 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 36.0 3.93e-01 93.5% 87.1%
177194 11.1.1.165 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ATG19 0.53 38.0 3.87e-01 97.2% 77.7%
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.53 30.0 3.69e-01 72.2% 96.7%
3195740 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 47.0 3.63e-01 100.0% 86.7%
4957228 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 40.0 3.77e-01 80.6% 99.2%
3631558 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.52 47.0 3.43e-01 100.0% 89.7%
5044652 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 39.0 4.21e-01 96.3% 100.0%
3994570 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 43.0 3.97e-01 100.0% 69.0%
3725153 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.51 34.0 3.82e-01 80.6% 92.5%
3177363 11.1.5.134 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF29914 0.51 42.0 3.80e-01 100.0% 64.7%
5068228 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 43.0 4.41e-01 97.2% 95.2%
3584589 4081.1.1.7 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I 0.51 42.0 3.46e-01 100.0% 49.2%
3607218 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 44.0 3.79e-01 99.1% 73.0%
3285966 10.22.1.1 ↗ beta sandwiches › jelly-roll › DUF1989 family protein › DUF1989 family protein › DUF1989 0.51 44.0 3.60e-01 100.0% 72.3%
4943168 1.1.7.144 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11 0.51 36.0 3.77e-01 93.5% 83.2%
3348414 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 42.0 3.10e-01 96.3% 50.6%
5058946 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 43.0 4.37e-01 97.2% 96.2%
3386975 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 43.0 4.27e-01 94.4% 97.4%