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MK308677.1__QAX97117.1__X__00173

Bact-Vir

MK308677.1__QAX97117.1__X__00173

Identity

Accession:
MK308677 ↗
Kingdom:
phage

Quality

50.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VmeM-Yong_MS32

TaxID: 2500765

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-205_219-238
PDB
D2 medium residues 852-955
PDB
D3 medium residues 956-1054
PDB
D4 medium residues 1168-1232
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 3.56e-01 100.0% 47.9%
3kdrA02 3.40.140.120 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › 0.54 44.0 3.72e-01 98.5% 92.9%
5dvyA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.53 38.0 3.20e-01 80.0% 79.4%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 39.0 3.00e-01 81.5% 69.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032559 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 43.0 3.99e-01 93.8% 94.4%
D5 medium residues 1233-1339
PDB
Domain cluster: rep: MW273926.1__QPZ53723.1__HTVC204P_gp37__00037__D11-105
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5utkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 4.39e-01 100.0% 82.2%
2cuhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 39.0 4.24e-01 96.3% 79.5%
1cczA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 4.56e-01 90.7% 87.1%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.59 44.0 4.36e-01 97.2% 72.4%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.60e-01 91.6% 84.9%
3cc1A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 38.0 4.13e-01 100.0% 80.7%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.57 40.0 4.18e-01 100.0% 81.2%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 46.0 4.85e-01 93.5% 100.0%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.57 36.0 3.85e-01 98.1% 73.4%
5wkfD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.42e-01 98.1% 84.3%
2f68X02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 48.0 4.23e-01 100.0% 63.6%
6ovnB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.37e-01 100.0% 80.3%
2vecA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 44.0 4.48e-01 100.0% 86.4%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 37.0 2.55e-01 100.0% 17.5%
1nfdA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.41e-01 98.1% 83.9%
1cvrA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 4.03e-01 100.0% 85.5%
6gszA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 4.26e-01 98.1% 83.3%
1m4kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 4.05e-01 100.0% 79.6%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 4.27e-01 86.9% 87.6%
5lz6A00 2.60.120.680 Mainly Beta › Sandwich › Jelly Rolls › GOLD domain 0.54 38.0 3.69e-01 99.1% 62.7%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 4.35e-01 97.2% 87.9%
4agrB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 4.13e-01 92.5% 88.9%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 38.0 4.20e-01 91.6% 100.0%
3klkA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 47.0 4.31e-01 100.0% 93.7%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 28.0 3.07e-01 76.6% 60.2%
3bnwB00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.52 42.0 3.75e-01 96.3% 60.5%
3gqcC04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 45.0 4.36e-01 96.3% 97.5%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.51 44.0 4.05e-01 96.3% 92.9%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 44.0 4.15e-01 96.3% 96.2%
1wckA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 45.0 4.12e-01 96.3% 95.6%
1lnsA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 43.0 3.63e-01 95.3% 90.3%
1kt0A02 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 39.0 3.88e-01 86.0% 94.7%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5043146 3386.1.1.0 ↗ beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related 0.67 55.0 5.81e-01 100.0% 97.9%
3261164 11.1.1.802 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.67 46.0 4.89e-01 97.2% 83.3%
4936904 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.63 51.0 5.38e-01 100.0% 96.8%
3259180 10.4.1.25 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF26736 0.63 41.0 4.58e-01 98.1% 85.5%
3228358 10.32.1.258 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_IRG7_N 0.62 41.0 4.35e-01 99.1% 76.8%
3933157 11.1.1.1085 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GBD_IRG7_N 0.62 42.0 4.31e-01 99.1% 74.0%
3902625 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 48.0 5.11e-01 99.1% 100.0%
3240194 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.60 44.0 4.56e-01 97.2% 84.0%
3254948 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 41.0 3.28e-01 70.1% 81.9%
3221490 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.60 50.0 4.51e-01 93.5% 78.7%
3761961 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 40.0 4.27e-01 100.0% 81.1%
3972951 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.59 40.0 4.70e-01 99.1% 100.0%
4971702 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 37.0 3.97e-01 98.1% 73.3%
3879235 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.59 49.0 4.95e-01 100.0% 93.3%
3994329 10.32.1.233 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Hemicentin 0.57 42.0 4.34e-01 98.1% 82.0%
4968382 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 39.0 4.01e-01 97.2% 72.4%
3900385 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 4.18e-01 100.0% 63.2%
4565791 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.57 44.0 4.70e-01 94.4% 98.9%
3553725 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.57 45.0 4.70e-01 99.1% 98.9%
4944863 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.57 42.0 3.66e-01 100.0% 50.9%
3898447 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.31e-01 100.0% 78.3%
3565482 11.1.1.4 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig,Ig_2 0.56 40.0 2.87e-01 100.0% 23.9%
3753600 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.56 39.0 4.21e-01 100.0% 86.7%
3533376 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.56 40.0 4.03e-01 100.0% 76.2%
3618320 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 38.0 3.87e-01 99.1% 70.4%
4987752 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 37.0 3.99e-01 93.5% 81.1%
3606438 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 38.0 3.44e-01 72.0% 78.1%
3863070 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.55 39.0 3.46e-01 100.0% 48.5%
3514337 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 4.32e-01 100.0% 95.3%
2883188 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.55 37.0 4.16e-01 97.2% 92.4%
3779194 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.55 35.0 3.66e-01 86.9% 68.0%
5060870 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 40.0 4.09e-01 98.1% 78.1%
4030043 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.55 38.0 4.03e-01 96.3% 82.1%
3879656 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.54 38.0 3.19e-01 72.0% 75.7%
3580755 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.54 46.0 4.19e-01 96.3% 96.0%
3285596 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 46.0 4.04e-01 100.0% 61.8%
3714006 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.53 48.0 3.69e-01 100.0% 89.7%
3994570 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 44.0 4.02e-01 100.0% 67.6%
5047474 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 44.0 4.69e-01 96.3% 100.0%
3785362 11.2.1.50 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_GDE1 0.53 39.0 3.65e-01 77.6% 75.6%
3526430 11.1.1.1031 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF25992, PF27919 0.53 43.0 3.27e-01 98.1% 37.6%
4447642 11.1.5.127 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF29228 0.52 42.0 3.88e-01 100.0% 67.1%
3624575 10.32.1.72 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.52 47.0 4.59e-01 98.1% 95.0%
3973531 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 46.0 4.27e-01 100.0% 78.6%
4577896 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 41.0 4.15e-01 99.1% 83.3%
4010415 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 47.0 4.24e-01 100.0% 77.9%
3488354 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 43.0 3.61e-01 91.6% 84.9%
5062074 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.92e-01 96.3% 85.0%
1014044 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.51 43.0 3.73e-01 96.3% 87.6%
4466667 1.1.7.95 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 0.50 43.0 4.20e-01 93.5% 93.9%
5042048 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.50 43.0 3.53e-01 96.3% 97.1%
3947204 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.50 45.0 4.22e-01 99.1% 89.2%
D6 medium residues 1340-1455
PDB
Domain cluster: rep: KM983329.1__AJA42681.1__phiCT9441A_69__00068__D88-182
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24299.2 best DUF7483 85.1 7.20e-24 94.0% 32.6%