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MK308677.1__QAX97137.1__X__00193

Bact-Vir

MK308677.1__QAX97137.1__X__00193

Identity

Accession:
MK308677 ↗
Kingdom:
phage

Quality

79.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VmeM-Yong_MS32

TaxID: 2500765

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-80
PDB
Domain cluster: rep: KC954775.1__AIA64970.1__S13_171__00171__D75-134
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.69 47.0 4.20e-01 93.6% 49.6%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 53.0 4.53e-01 92.3% 53.6%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 48.0 3.68e-01 80.8% 86.4%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.63 48.0 3.47e-01 80.8% 50.5%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.57e-01 83.3% 85.7%
1m1jE01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.62 43.0 3.49e-01 73.1% 92.4%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.62 38.0 4.45e-01 78.2% 92.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 40.0 4.50e-01 79.5% 91.1%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 4.18e-01 84.6% 71.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 36.0 4.43e-01 76.9% 95.8%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.50e-01 91.0% 85.9%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 45.0 4.39e-01 87.2% 71.3%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.60 46.0 3.84e-01 83.3% 67.4%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 41.0 4.02e-01 84.6% 65.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.25e-01 92.3% 78.1%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.88e-01 84.6% 100.0%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 3.81e-01 76.9% 81.1%
1lwuC01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.58 40.0 3.34e-01 74.4% 92.7%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.82e-01 78.2% 87.0%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.57 37.0 3.97e-01 75.6% 77.3%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.95e-01 79.5% 82.8%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 44.0 3.87e-01 85.9% 99.2%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.57 37.0 4.20e-01 76.9% 91.2%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.57 46.0 3.83e-01 88.5% 92.0%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.83e-01 83.3% 79.5%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.78e-01 83.3% 85.8%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.57e-01 85.9% 98.5%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 4.01e-01 89.7% 64.0%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.61e-01 79.5% 72.6%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.48e-01 82.1% 82.4%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.55 38.0 4.31e-01 76.9% 98.3%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 4.30e-01 92.3% 84.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.04e-01 85.9% 86.4%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.54 40.0 3.46e-01 84.6% 50.0%
4adiA02 3.30.67.20 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Rubella membrane glycoprotein E1, domain 2 0.54 39.0 3.77e-01 76.9% 70.5%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 46.0 4.16e-01 98.7% 73.0%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.70e-01 83.3% 85.2%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.72e-01 78.2% 78.5%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 38.0 3.46e-01 87.2% 56.9%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.53 38.0 3.61e-01 76.9% 78.9%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 2.91e-01 100.0% 51.9%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.76e-01 87.2% 97.2%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.52 44.0 4.03e-01 96.2% 87.5%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 3.95e-01 88.5% 85.4%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.52 41.0 3.91e-01 88.5% 73.9%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.51 36.0 3.52e-01 75.6% 100.0%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.51 33.0 3.67e-01 74.4% 83.9%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 36.0 3.08e-01 76.9% 83.2%
1y7eA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.50 42.0 3.72e-01 94.9% 95.8%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 3.12e-01 91.0% 79.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3223830 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 44.0 5.31e-01 73.1% 96.0%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 42.0 4.14e-01 80.8% 61.2%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 43.0 4.99e-01 87.2% 98.2%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 5.21e-01 87.2% 100.0%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 5.25e-01 88.5% 100.0%
3241998 377.11.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › THAP domain › THAP domain 0.63 44.0 3.62e-01 73.1% 89.7%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 4.63e-01 87.2% 74.1%
3939997 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.62 45.0 4.34e-01 87.2% 66.7%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 51.0 5.25e-01 92.3% 94.7%
4002985 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.93e-01 82.1% 98.3%
3817476 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 39.0 4.57e-01 79.5% 100.0%
3294392 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.61 47.0 4.61e-01 97.4% 76.5%
3709029 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.76e-01 87.2% 95.0%
4497776 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.61 45.0 4.54e-01 87.2% 77.5%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.50e-01 88.5% 86.2%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 47.0 4.80e-01 88.5% 88.0%
3897826 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.60 47.0 4.08e-01 82.1% 69.6%
4398429 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.60 45.0 4.49e-01 87.2% 77.5%
3330943 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.59 40.0 4.59e-01 85.9% 100.0%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 39.0 4.24e-01 84.6% 85.5%
3390155 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.59 47.0 4.63e-01 87.2% 78.8%
3792948 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 43.0 3.89e-01 78.2% 84.5%
3830187 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 40.0 4.56e-01 87.2% 100.0%
3740784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.70e-01 87.2% 84.7%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 41.0 4.03e-01 91.0% 67.1%
3876680 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 45.0 4.21e-01 89.7% 65.0%
4022025 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.59 43.0 3.54e-01 91.0% 42.1%
3904452 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 43.0 3.81e-01 78.2% 87.0%
3804236 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.69e-01 82.1% 61.4%
3588727 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.63e-01 80.8% 91.4%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 3.26e-01 97.4% 28.9%
3228278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.37e-01 91.0% 87.7%
4463104 1.1.5.11 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › UbiD 0.58 49.0 3.65e-01 98.7% 83.6%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 41.0 4.51e-01 93.6% 96.7%
4254437 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.58 44.0 4.29e-01 87.2% 74.1%
3597224 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.93e-01 85.9% 78.4%
4229219 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.58 45.0 4.21e-01 87.2% 68.4%
3395150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.51e-01 82.1% 98.3%
3744357 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.57 44.0 4.29e-01 87.2% 75.3%
4938445 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.57 44.0 3.75e-01 93.6% 48.9%
3616243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 4.39e-01 94.9% 100.0%
4606097 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.57 45.0 4.41e-01 87.2% 78.6%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.69e-01 87.2% 96.0%
1391581 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.57 39.0 3.68e-01 82.1% 59.1%
3387360 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 45.0 4.45e-01 91.0% 80.0%
4431786 1.1.5.11 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › UbiD 0.57 48.0 3.48e-01 100.0% 86.8%
3642001 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.57 46.0 4.79e-01 92.3% 100.0%
3838444 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 43.0 4.30e-01 82.1% 97.5%
3222051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 4.14e-01 82.1% 86.2%
3795301 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.56 39.0 3.91e-01 84.6% 70.0%
3699652 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.64e-01 96.2% 100.0%
3522226 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.56 45.0 4.14e-01 87.2% 67.0%
4162532 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 46.0 4.66e-01 93.6% 93.3%
3479079 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.64e-01 83.3% 82.4%
3587030 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.62e-01 96.2% 100.0%
3588736 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 42.0 4.48e-01 82.1% 98.5%
3257607 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.40e-01 87.2% 96.0%
3404157 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.54 45.0 3.80e-01 92.3% 92.6%
3619467 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.54 41.0 3.76e-01 83.3% 80.9%
396031 4.22.1.1 ↗ beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.54 45.0 4.22e-01 96.2% 79.2%
4403870 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.53 44.0 4.21e-01 94.9% 77.9%
3287567 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.53 37.0 3.60e-01 78.2% 64.4%
4027080 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.52 45.0 3.86e-01 100.0% 63.0%
3629316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 44.0 4.13e-01 97.4% 97.0%
3501337 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.52 42.0 4.21e-01 89.7% 96.2%
3843748 220.1.1.48 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Jak1_Phl 0.51 39.0 3.29e-01 82.1% 68.9%
3722618 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.51 41.0 3.31e-01 92.3% 72.4%
3214653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.87e-01 88.5% 95.8%