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MK308677.1__QAX97194.1__X__00250

Bact-Vir

MK308677.1__QAX97194.1__X__00250

Identity

Accession:
MK308677 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-71
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.78 65.0 5.54e-01 91.8% 71.4%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.77 67.0 5.36e-01 98.0% 79.4%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.75 65.0 5.23e-01 98.0% 76.6%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.74 64.0 5.24e-01 98.0% 87.8%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.72 49.0 4.29e-01 71.4% 52.7%
1z85A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.72 62.0 5.63e-01 100.0% 91.0%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.70 51.0 5.40e-01 95.9% 90.7%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.68 52.0 5.10e-01 100.0% 76.4%
1dm9A00 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.68 60.0 4.65e-01 98.0% 76.9%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 54.0 4.40e-01 91.8% 75.0%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 57.0 4.75e-01 100.0% 76.9%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 54.0 5.22e-01 91.8% 82.5%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.66 50.0 4.98e-01 100.0% 80.4%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.66 54.0 5.08e-01 100.0% 89.2%
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.65 53.0 4.92e-01 100.0% 91.2%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 52.0 3.45e-01 100.0% 21.1%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 55.0 4.97e-01 100.0% 74.6%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.64 52.0 4.77e-01 100.0% 93.2%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.62 53.0 4.03e-01 100.0% 54.1%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.61 45.0 3.86e-01 81.6% 62.7%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 46.0 3.66e-01 87.8% 68.8%
3li9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 47.0 3.48e-01 87.8% 71.7%
3lifB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 47.0 3.51e-01 89.8% 38.9%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.60 51.0 4.42e-01 100.0% 75.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.16e-01 100.0% 58.7%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 46.0 3.79e-01 91.8% 57.3%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.58 45.0 4.62e-01 100.0% 100.0%
2xzmW01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.58 49.0 3.78e-01 98.0% 62.7%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 44.0 3.51e-01 93.9% 39.3%
2cg7A02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.58 42.0 4.43e-01 85.7% 90.9%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 44.0 3.38e-01 87.8% 43.5%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.57 43.0 2.51e-01 100.0% 8.1%
3bnwB00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.56 45.0 3.35e-01 100.0% 49.0%
2kc5A01 3.30.1460.40 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE 0.56 45.0 3.37e-01 93.9% 45.6%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 2.87e-01 100.0% 25.5%
4perB00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.55 45.0 3.65e-01 100.0% 74.3%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.55 38.0 2.96e-01 71.4% 34.6%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 44.0 2.75e-01 100.0% 27.8%
1v5vA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.54 41.0 3.01e-01 91.8% 32.9%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 40.0 3.10e-01 87.8% 45.2%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 40.0 3.11e-01 95.9% 43.8%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.77e-01 100.0% 22.0%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 44.0 2.79e-01 100.0% 30.6%
4kktA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.50 37.0 3.06e-01 81.6% 47.9%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 35.0 2.87e-01 75.5% 55.8%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048696 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 62.0 4.22e-01 85.7% 26.5%
3199259 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.76 58.0 5.28e-01 83.7% 66.2%
3322961 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.75 66.0 5.42e-01 100.0% 88.9%
4422251 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.75 54.0 5.44e-01 79.6% 76.0%
4053957 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.74 51.0 5.09e-01 71.4% 70.0%
4668201 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.74 54.0 5.39e-01 79.6% 76.0%
3935469 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 57.0 5.04e-01 83.7% 64.3%
3906671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.83e-01 79.6% 95.0%
3271846 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.73 50.0 4.82e-01 83.7% 63.6%
5071089 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 61.0 6.12e-01 93.9% 92.0%
3597513 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 56.0 5.39e-01 100.0% 74.5%
3900165 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.71 54.0 5.68e-01 100.0% 97.7%
4500949 1.1.5.80 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF26339 0.71 61.0 5.35e-01 100.0% 90.7%
5038766 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.71 52.0 4.37e-01 89.8% 47.5%
4336500 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.69 50.0 4.86e-01 81.6% 69.1%
5069323 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 58.0 5.80e-01 93.9% 90.0%
3498702 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.68 55.0 5.71e-01 100.0% 100.0%
5051090 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 58.0 5.05e-01 100.0% 66.3%
4957137 223.1.1.24 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.67 53.0 4.24e-01 87.8% 69.0%
4991056 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.67 56.0 5.42e-01 93.9% 85.5%
5018913 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.67 53.0 4.04e-01 89.8% 59.2%
5028514 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.66 54.0 5.13e-01 93.9% 78.3%
137832 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.65 53.0 4.92e-01 100.0% 91.2%
4950582 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.65 51.0 3.87e-01 91.8% 55.4%
4996195 304.39.1.6 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_2nd 0.64 49.0 4.67e-01 87.8% 70.0%
4955635 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.63 52.0 4.83e-01 93.9% 75.0%
3886970 5.1.4.130 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › AAA_16 0.63 47.0 2.65e-01 83.7% 14.0%
3826229 376.1.2.16 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.62 45.0 4.34e-01 75.5% 85.5%
5053323 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.62 51.0 3.95e-01 95.9% 53.0%
3811251 239.3.1.0 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.61 52.0 3.91e-01 98.0% 75.8%
4950580 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.61 50.0 3.71e-01 95.9% 39.3%
3404414 391.1.2.3 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.60 46.0 3.78e-01 98.0% 45.6%
3331417 239.3.1.1 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.60 48.0 3.73e-01 98.0% 75.2%
3965886 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.60 38.0 3.93e-01 100.0% 68.9%
3710995 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.60 48.0 3.33e-01 91.8% 64.4%
3842576 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.59 40.0 3.09e-01 71.4% 45.8%
3815934 239.3.1.1 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.59 49.0 3.64e-01 98.0% 72.7%
3214386 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.59 46.0 4.64e-01 89.8% 86.0%
3514344 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 50.0 3.91e-01 100.0% 42.6%
3539914 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.59 47.0 3.29e-01 100.0% 25.4%
4075142 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 46.0 3.49e-01 93.9% 37.8%
3493255 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 44.0 3.93e-01 85.7% 71.6%
4422553 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.57 43.0 2.39e-01 79.6% 10.8%
4029439 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.57 39.0 3.47e-01 100.0% 47.8%
5030490 221.1.2.0 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.57 48.0 3.76e-01 95.9% 64.5%
3312938 239.3.1.0 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.57 46.0 3.52e-01 95.9% 77.7%
4889700 221.1.2.6 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4,RS4NT 0.57 49.0 3.73e-01 98.0% 61.5%
3427502 239.3.1.0 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.57 45.0 3.46e-01 93.9% 57.6%
3247368 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 41.0 3.45e-01 81.6% 75.0%
3815935 239.3.1.1 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.55 45.0 3.40e-01 98.0% 72.6%
3623383 239.3.1.0 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.55 45.0 3.52e-01 98.0% 80.8%
5049914 221.1.2.7 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › RS4NT 0.55 46.0 3.60e-01 95.9% 64.5%
3539250 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.55 43.0 3.59e-01 100.0% 46.7%
4928701 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 43.0 3.48e-01 93.9% 50.5%
3804385 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 46.0 4.36e-01 98.0% 100.0%
3297691 239.3.1.1 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.54 45.0 3.36e-01 100.0% 75.7%
3676609 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 38.0 2.44e-01 81.6% 24.6%
3308856 239.3.1.1 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.53 41.0 3.15e-01 98.0% 74.1%
5051371 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.53 43.0 2.72e-01 100.0% 66.0%
3933227 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.46e-01 98.0% 52.2%
4328158 223.1.1.51 a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.52 41.0 3.16e-01 95.9% 35.6%
4237254 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.51 38.0 3.43e-01 93.9% 74.1%
3481114 372.2.1.0 a+b complex topology › RNase A-like › EndoU-like › EndoU-like 0.51 39.0 2.64e-01 95.9% 98.5%
4971897 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.36e-01 95.9% 60.0%