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MK318083.1__AZV01977.1__X__00160

Bact-Vir

MK318083.1__AZV01977.1__X__00160

Identity

Accession:
MK318083 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Shenzhenvirus› Aeromonas_phage_Akh-2

TaxID: 2500821

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-68
PDB
Domain cluster: rep: KJ858521.1__AII26779.1__AH6C_025__00026__D294-341
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 52.0 3.28e-01 83.1% 43.2%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 52.0 3.29e-01 84.6% 68.4%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 46.0 3.53e-01 84.6% 60.2%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.60 47.0 3.76e-01 84.6% 75.4%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 46.0 3.08e-01 95.4% 61.8%
3ltiA01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.55 43.0 3.21e-01 84.6% 43.0%
3dorA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 38.0 3.33e-01 73.8% 88.8%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.83e-01 87.7% 72.2%
6zxfz01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 37.0 3.11e-01 70.8% 89.4%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.54 39.0 3.83e-01 78.5% 70.0%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 43.0 2.78e-01 87.7% 45.5%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 41.0 2.60e-01 81.5% 37.0%
8gzhC01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.54 41.0 3.08e-01 86.2% 44.2%
1p38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.06e-01 76.9% 99.3%
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 38.0 3.17e-01 76.9% 87.7%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.52 43.0 3.22e-01 93.8% 41.2%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 43.0 2.80e-01 95.4% 99.4%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.52 38.0 3.44e-01 78.5% 80.9%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.90e-01 95.4% 96.4%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 38.0 3.14e-01 83.1% 66.0%
1wlgA02 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.51 38.0 3.16e-01 86.2% 56.4%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.51 35.0 3.19e-01 78.5% 52.9%
3ugvA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 37.0 3.08e-01 81.5% 90.5%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3594838 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.65 58.0 4.62e-01 100.0% 56.2%
1724304 9.1.1.30 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF_like 0.64 49.0 4.22e-01 83.1% 64.1%
3891230 5.1.5.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WDR93 0.63 46.0 2.73e-01 78.5% 17.5%
3696848 5.1.4.331 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30861 0.61 45.0 2.64e-01 81.5% 29.6%
4014170 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 51.0 3.41e-01 98.5% 98.2%
3921266 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.59 47.0 2.85e-01 92.3% 72.7%
None — 0.59 46.0 3.03e-01 89.2% 82.5%
4891007 5.1.5.122 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_CFAP43 0.59 51.0 3.25e-01 98.5% 78.8%
3273324 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.58 48.0 2.90e-01 90.8% 97.1%
3224830 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 41.0 2.50e-01 72.3% 88.5%
3497267 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 47.0 3.02e-01 90.8% 31.4%
3906179 4099.1.1.9 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med27 0.57 43.0 3.31e-01 81.5% 45.8%
5057301 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 50.0 3.40e-01 100.0% 33.6%
3415714 79.1.1.23 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Chitin_bind_4 0.57 42.0 4.04e-01 80.0% 80.0%
3970915 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 48.0 3.12e-01 98.5% 31.7%
3173290 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 45.0 2.89e-01 95.4% 78.1%
3389299 12.1.1.60 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Chitin_bind_4 0.56 42.0 3.99e-01 83.1% 77.5%
4932880 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.56 41.0 3.69e-01 78.5% 63.3%
4028413 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 3.04e-01 100.0% 94.5%
4969694 4200.1.1.0 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like 0.55 42.0 3.19e-01 84.6% 42.9%
3739782 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.55 42.0 3.26e-01 84.6% 58.7%
3393543 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.55 46.0 2.79e-01 100.0% 60.4%
3398140 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.55 41.0 3.95e-01 80.0% 84.0%
3933589 5.1.5.127 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_VPS8 0.55 48.0 3.03e-01 98.5% 46.9%
4182291 223.1.1.5 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA 0.54 40.0 2.74e-01 78.5% 62.0%
4398059 813.1.1.1 ↗ a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone 0.54 44.0 3.10e-01 92.3% 66.7%
4380331 295.1.1.27 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.54 41.0 4.03e-01 86.2% 78.6%
3636703 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 2.84e-01 100.0% 30.8%
3600667 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.73e-01 92.3% 88.3%
3716632 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 40.0 3.15e-01 81.5% 49.0%
3617894 9.1.1.45 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › FBO_C 0.53 45.0 3.51e-01 98.5% 57.4%
1141888 331.10.2.2 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SpmSyn_N 0.53 39.0 3.45e-01 78.5% 76.0%
3643787 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.52 42.0 2.77e-01 96.9% 38.3%
3993098 5.1.5.52 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.52 44.0 2.62e-01 100.0% 31.5%
3582026 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.52 35.0 3.32e-01 73.8% 56.2%
3962288 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 38.0 3.09e-01 81.5% 58.5%
4002701 5.1.4.333 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF31099 0.51 42.0 2.65e-01 100.0% 43.9%
3508001 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 2.79e-01 100.0% 40.0%
3932539 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.78e-01 98.5% 46.6%
3681159 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.74e-01 95.4% 27.3%
3229101 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.50 42.0 4.07e-01 95.4% 86.3%
3604573 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.50 43.0 2.53e-01 100.0% 12.8%