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MK327930.1__QBO61309.1__EdH4_00027__00027
Bact-VirMK327930.1__QBO61309.1__EdH4_00027__00027
Identity
- Accession:
- MK327930 ↗
- Kingdom:
- phage
Quality
70.7
mean pLDDT
Taxonomy
TaxID: 2502307
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-82
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iv9A03 | 1.10.405.40 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.60 | 46.0 | 3.31e-01 | 90.9% | 79.2% |
| 1ameA00 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.58 | 43.0 | 3.80e-01 | 81.8% | 90.9% |
| 1wvoA00 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.57 | 42.0 | 3.52e-01 | 81.8% | 75.9% |
| 2ph7A01 | 1.10.3400.10 | Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like | 0.56 | 40.0 | 2.99e-01 | 79.5% | 46.8% |
| 3lhoA01 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.55 | 39.0 | 2.63e-01 | 86.4% | 48.1% |
| 4j80A02 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.53 | 37.0 | 3.34e-01 | 77.3% | 71.2% |
| 2a6aB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 37.0 | 2.98e-01 | 88.6% | 63.9% |
| 3tm8B00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 38.0 | 2.35e-01 | 86.4% | 26.7% |
| 2od0A00 | 3.30.1460.30 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone | 0.51 | 37.0 | 3.02e-01 | 86.4% | 41.7% |
| 2mhyA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.50 | 33.0 | 3.18e-01 | 90.9% | 54.4% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001806 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.74 | 59.0 | 5.77e-01 | 100.0% | 83.3% |
| 4982370 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.73 | 53.0 | 5.50e-01 | 95.5% | 90.0% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.73 | 59.0 | 5.91e-01 | 100.0% | 91.1% |
| 5068408 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.72 | 57.0 | 5.76e-01 | 100.0% | 88.9% |
| 4934987 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.72 | 58.0 | 5.78e-01 | 100.0% | 88.9% |
| 4460255 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.72 | 56.0 | 5.48e-01 | 100.0% | 80.0% |
| 5066664 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.72 | 59.0 | 5.93e-01 | 100.0% | 91.1% |
| 4057802 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.70 | 56.0 | 5.61e-01 | 100.0% | 88.9% |
| 5061797 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.66 | 47.0 | 4.87e-01 | 88.6% | 87.5% |
| 3914462 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.65 | 57.0 | 4.51e-01 | 100.0% | 64.4% |
| 5038458 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.62 | 51.0 | 4.98e-01 | 100.0% | 92.0% |
| 3401010 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 45.0 | 3.42e-01 | 86.4% | 82.6% |
| 4375742 | 512.1.1.4 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › FlgI | 0.59 | 48.0 | 4.19e-01 | 100.0% | 75.6% |
| 3810327 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.58 | 41.0 | 2.29e-01 | 84.1% | 4.7% |
| 3667151 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.58 | 42.0 | 2.90e-01 | 79.5% | 37.6% |
| 3325965 | 109.4.1.1371 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif | 0.57 | 38.0 | 2.21e-01 | 70.5% | 10.5% |
| 3310260 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.57 | 40.0 | 2.39e-01 | 84.1% | 8.8% |
| 3671232 | 109.4.1.1610 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, E_motif | 0.57 | 38.0 | 2.32e-01 | 81.8% | 10.0% |
| 3994296 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.56 | 42.0 | 2.75e-01 | 88.6% | 18.4% |
| 3329843 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 39.0 | 2.47e-01 | 84.1% | 13.5% |
| 3463429 | 109.4.1.1335 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif | 0.54 | 38.0 | 2.21e-01 | 84.1% | 7.2% |
| 3419372 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.53 | 38.0 | 2.23e-01 | 81.8% | 8.4% |
| 4995408 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.53 | 35.0 | 2.29e-01 | 70.5% | 73.1% |
| 3743600 | 109.4.1.1297 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 | 0.53 | 31.0 | 1.73e-01 | 88.6% | 3.2% |
| 3327326 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.52 | 36.0 | 2.02e-01 | 75.0% | 6.9% |
| 4993049 | 3754.1.1.1 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 | 0.52 | 39.0 | 2.52e-01 | 97.7% | 79.3% |
| 3739836 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.51 | 39.0 | 2.42e-01 | 86.4% | 95.1% |
| 3325708 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.51 | 39.0 | 2.41e-01 | 86.4% | 18.1% |
| 4200531 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.50 | 38.0 | 2.47e-01 | 95.5% | 52.6% |