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MK327938.1__QBO63800.1__Goslar_00007__00007

Bact-Vir

MK327938.1__QBO63800.1__Goslar_00007__00007

Identity

Accession:
MK327938 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-101
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lc0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.71 54.0 4.70e-01 88.5% 52.4%
5mv0A01 3.30.70.2640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Arenavirus RNA polymerase 0.69 43.0 4.46e-01 97.9% 67.4%
2kpnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 48.0 5.26e-01 87.5% 96.1%
6jw7A01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.64 52.0 4.25e-01 88.5% 47.6%
1ss4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 45.0 3.85e-01 90.6% 47.7%
2z4tA01 2.60.40.3010 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 52.0 5.36e-01 89.6% 98.9%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.63 44.0 4.17e-01 71.9% 91.9%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 43.0 3.94e-01 71.9% 85.6%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.62 42.0 3.64e-01 99.0% 45.0%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.62 43.0 4.02e-01 71.9% 89.9%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.61 42.0 3.79e-01 71.9% 77.5%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 3.91e-01 72.9% 81.6%
6njeA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.60 55.0 3.86e-01 100.0% 52.5%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 3.81e-01 71.9% 87.6%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.60 48.0 4.52e-01 86.5% 98.3%
1gr0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 43.0 4.60e-01 76.0% 96.4%
2p2sA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 53.0 4.23e-01 100.0% 58.7%
8d40A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.59 47.0 4.65e-01 86.5% 97.1%
2yhgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 54.0 5.16e-01 100.0% 89.1%
3oq3B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.59e-01 95.8% 90.5%
1ffvB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.58 41.0 3.23e-01 72.9% 36.9%
3e18A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 51.0 4.00e-01 99.0% 50.5%
1v8hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.54e-01 86.5% 100.0%
3b8lA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 3.57e-01 71.9% 79.4%
3nwnA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.58 52.0 3.65e-01 100.0% 55.5%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 39.0 3.80e-01 70.8% 81.7%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 40.0 3.58e-01 75.0% 81.8%
5dzxA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.57 46.0 4.44e-01 87.5% 96.3%
1uurA02 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.57 48.0 4.37e-01 92.7% 91.4%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 33.0 3.16e-01 99.0% 49.5%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.56e-01 72.9% 88.1%
5i8dA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.56 45.0 4.28e-01 87.5% 92.9%
6s5xA01 2.60.40.3600 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 40.0 4.33e-01 91.7% 98.7%
5vh2D01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.55 44.0 4.34e-01 87.5% 95.1%
2jksA01 2.60.40.1320 Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain 0.55 51.0 4.37e-01 100.0% 94.6%
5dzvA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.55 44.0 4.30e-01 87.5% 95.3%
2pndA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.15e-01 87.5% 97.5%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 30.0 3.01e-01 100.0% 51.0%
2ckfB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 3.30e-01 74.0% 79.4%
4m00A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.57e-01 87.5% 100.0%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.54e-01 74.0% 82.3%
5vt8C01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.54 43.0 4.27e-01 87.5% 95.0%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.40e-01 72.9% 81.7%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 46.0 3.18e-01 100.0% 93.5%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 47.0 3.42e-01 99.0% 38.8%
6s5wA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 4.19e-01 87.5% 99.0%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 47.0 4.08e-01 100.0% 95.9%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 37.0 3.19e-01 78.1% 56.0%
5tfmA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 45.0 4.54e-01 97.9% 98.0%
6canA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 41.0 2.94e-01 87.5% 78.1%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 44.0 3.80e-01 99.0% 84.0%
1sbkA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 44.0 3.95e-01 99.0% 70.1%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 28.0 2.96e-01 99.0% 55.6%
3l20A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 41.0 3.54e-01 97.9% 55.2%
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 43.0 4.04e-01 99.0% 80.2%
1owwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 4.03e-01 86.5% 97.8%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 42.0 3.85e-01 100.0% 68.3%
4puxA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.50 41.0 3.56e-01 91.7% 87.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3872766 298.1.1.12 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Biliv-reduc_cat 0.72 55.0 5.04e-01 88.5% 61.6%
5069695 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.70 48.0 4.60e-01 70.8% 64.2%
3372143 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.69 52.0 4.75e-01 79.2% 76.8%
3941717 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.69 48.0 4.96e-01 71.9% 88.6%
4958552 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 34.0 3.21e-01 93.8% 39.1%
3945307 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.68 52.0 4.41e-01 100.0% 50.3%
3923273 206.1.1.44 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 0.66 45.0 2.96e-01 70.8% 18.1%
3377619 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.66 58.0 4.67e-01 99.0% 61.8%
3808862 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.65 45.0 4.05e-01 71.9% 80.4%
3785652 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.65 45.0 3.84e-01 71.9% 83.1%
3297404 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.65 45.0 3.98e-01 71.9% 80.7%
3406064 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 58.0 4.07e-01 99.0% 70.8%
3450141 283.2.1.8 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.63 49.0 4.85e-01 83.3% 93.0%
4438762 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.63 44.0 4.70e-01 72.9% 85.9%
3504070 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.63 44.0 3.85e-01 71.9% 80.7%
3223708 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 44.0 4.15e-01 74.0% 86.7%
3169231 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.62 44.0 3.83e-01 72.9% 84.8%
3575714 5.1.4.329 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.62 43.0 2.86e-01 71.9% 21.1%
5055392 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.62 50.0 4.41e-01 99.0% 60.0%
2628859 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.62 42.0 3.86e-01 71.9% 85.1%
3602503 264.2.1.1 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.61 44.0 4.05e-01 97.9% 59.2%
3483288 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 50.0 4.56e-01 90.6% 76.9%
3798282 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 42.0 3.92e-01 71.9% 85.6%
3284807 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 42.0 3.81e-01 71.9% 80.0%
3597539 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 55.0 3.73e-01 100.0% 48.7%
4355655 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.61 42.0 3.85e-01 95.8% 55.2%
3930206 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 5.15e-01 92.7% 97.0%
3599617 129.1.1.0 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.60 54.0 3.63e-01 96.9% 35.1%
2632043 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.60 41.0 3.72e-01 71.9% 80.0%
2028069 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.60 53.0 4.60e-01 97.9% 70.7%
3889571 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.59 41.0 3.83e-01 71.9% 82.1%
3848773 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.59 41.0 3.48e-01 71.9% 67.9%
3783000 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 46.0 4.69e-01 92.7% 83.2%
3499053 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 42.0 3.73e-01 97.9% 53.3%
3710733 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.58 40.0 3.82e-01 72.9% 85.8%
1200770 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.58 51.0 4.55e-01 99.0% 76.4%
3508573 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 34.0 3.33e-01 88.5% 52.4%
3950026 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 40.0 3.66e-01 72.9% 79.9%
3474148 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 33.0 3.08e-01 87.5% 45.0%
3741071 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.57 40.0 3.59e-01 74.0% 77.1%
3191571 11.1.1.85 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3_5 0.57 50.0 4.38e-01 95.8% 96.4%
3492348 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.56 34.0 3.01e-01 91.7% 40.0%
1488175 11.1.1.351 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › K319L-like_PKD 0.56 48.0 4.93e-01 93.8% 95.7%
4982481 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 32.0 3.22e-01 91.7% 55.8%
1175847 3156.3.1.1 beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family › SAG 0.55 51.0 4.37e-01 100.0% 94.6%
3393168 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 33.0 3.18e-01 91.7% 51.8%
3282685 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 37.0 3.52e-01 72.9% 87.5%
3252235 11.1.1.37 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 0.53 46.0 4.26e-01 96.9% 100.0%
3390363 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.94e-01 91.7% 97.8%
3701390 11.8.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.52 44.0 3.31e-01 92.7% 98.0%
4383723 5087.3.1.0 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C 0.52 34.0 2.35e-01 71.9% 21.0%
4152544 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 46.0 3.94e-01 93.8% 65.5%
3880845 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 43.0 4.20e-01 91.7% 85.7%
2553892 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 35.0 3.36e-01 70.8% 84.2%
3678591 243.3.1.12 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.52 37.0 3.80e-01 75.0% 81.1%
4972572 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.51 37.0 2.63e-01 80.2% 54.6%
3464474 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 44.0 3.73e-01 93.8% 62.6%
5005180 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 41.0 3.81e-01 93.8% 68.0%
4978131 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.50 38.0 2.81e-01 81.2% 53.1%