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MK335533.1__QAX92060.1__vBSsoS008_053__00053
Bact-VirMK335533.1__QAX92060.1__vBSsoS008_053__00053
Identity
- Accession:
- MK335533 ↗
- Kingdom:
- phage
Quality
83.3
mean pLDDT
Taxonomy
TaxID: 2507846
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-51
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d37A02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.77 | 57.0 | 4.76e-01 | 78.0% | 47.1% |
| 7pmpA01 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.68 | 49.0 | 4.36e-01 | 78.0% | 56.8% |
| 4g08A01 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.64 | 45.0 | 4.09e-01 | 78.0% | 54.3% |
| 1xviA02 | 3.30.980.20 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 | 0.62 | 44.0 | 3.59e-01 | 76.0% | 86.2% |
| 4jz8B00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.61 | 42.0 | 2.61e-01 | 72.0% | 38.9% |
| 3ehgA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.57 | 43.0 | 3.25e-01 | 82.0% | 72.0% |
| 1r4wA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 37.0 | 2.51e-01 | 70.0% | 21.2% |
| 1bxoA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.54 | 37.0 | 2.73e-01 | 74.0% | 44.8% |
| 2cxaA01 | 3.30.70.3550 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Leucyl/phenylalanyl-tRNA-protein transferase, N-terminal domain | 0.52 | 37.0 | 3.56e-01 | 78.0% | 76.7% |
| 1fohA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 39.0 | 2.52e-01 | 82.0% | 58.5% |
| 2grvC03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.50 | 40.0 | 2.75e-01 | 100.0% | 91.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3980818 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.87 | 80.0 | 5.75e-01 | 100.0% | 38.5% |
| 4295057 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.62 | 45.0 | 2.83e-01 | 78.0% | 30.0% |
| 4006944 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.62 | 45.0 | 3.67e-01 | 78.0% | 85.3% |
| 4968148 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.54 | 43.0 | 2.86e-01 | 100.0% | 46.4% |
| 3344177 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.51 | 35.0 | 3.62e-01 | 74.0% | 91.1% |
D2
medium
residues 67-167
Domain cluster:
rep: NC_074755.1__YP_010774351.1__QJS28_gp38__00038__D369-473_584-611
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13550.14 best | Phage-tail_3 | 32.3 | 1.30e-07 | 74.3% | 40.5% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cddB03 | 3.30.1920.10 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold | 0.81 | 47.0 | 6.06e-01 | 71.3% | 100.0% |
| 1wruA03 | 3.30.1920.10 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold | 0.78 | 44.0 | 5.67e-01 | 73.3% | 100.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3573688 | 3071.1.1.6 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage-tail_3 | 0.93 | 63.0 | 7.06e-01 | 72.3% | 87.5% |
| 3964699 | 3071.1.1.6 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage-tail_3 | 0.85 | 58.0 | 6.83e-01 | 71.3% | 100.0% |
| 4534874 | 3071.1.1.1 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage_GPD | 0.74 | 50.0 | 5.85e-01 | 70.3% | 100.0% |
| 4929759 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 62.0 | 5.33e-01 | 100.0% | 59.4% |
| 4494081 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 38.0 | 3.14e-01 | 71.3% | 87.0% |