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MK335533.1__QAX92090.1__vBSsoS008_083__00083

Bact-Vir

MK335533.1__QAX92090.1__vBSsoS008_083__00083

Identity

Accession:
MK335533 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Tunavirus› Shigella_phage_vB_SsoS_008

TaxID: 2507846

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-48
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.76 60.0 4.46e-01 97.4% 44.6%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.75 55.0 4.92e-01 81.6% 61.8%
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.73 47.0 4.91e-01 76.3% 73.5%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.71 55.0 3.95e-01 92.1% 32.5%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 49.0 3.38e-01 76.3% 20.4%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.69 52.0 4.10e-01 92.1% 41.5%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 56.0 4.15e-01 100.0% 39.1%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.67 57.0 4.84e-01 100.0% 84.8%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 54.0 4.09e-01 100.0% 67.3%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 50.0 3.92e-01 97.4% 43.7%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.65 52.0 4.77e-01 100.0% 73.7%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 51.0 3.82e-01 100.0% 46.2%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 53.0 4.15e-01 100.0% 74.4%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 4.04e-01 100.0% 44.1%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 49.0 4.38e-01 97.4% 88.9%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 50.0 3.72e-01 100.0% 75.0%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 51.0 3.48e-01 100.0% 96.2%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 44.0 4.16e-01 94.7% 61.5%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.21e-01 97.4% 62.7%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 3.25e-01 100.0% 47.6%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 4.03e-01 76.3% 61.7%
2e9hA02 2.20.25.350 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 42.0 4.08e-01 76.3% 68.2%
1bcoA02 2.30.30.130 Mainly Beta › Roll › SH3 type barrels. › Transposase, Mu, C-terminal 0.60 40.0 3.50e-01 71.1% 89.7%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.59 42.0 3.87e-01 81.6% 58.9%
1ncsA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 46.0 4.44e-01 100.0% 78.7%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.57 40.0 3.76e-01 76.3% 61.5%
7sbeA01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.57 42.0 2.75e-01 92.1% 96.4%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 46.0 3.55e-01 100.0% 47.2%
2fgeA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 42.0 2.66e-01 92.1% 92.0%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 44.0 4.50e-01 89.5% 100.0%
2fhxA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 41.0 2.62e-01 92.1% 91.4%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.55 47.0 3.54e-01 100.0% 98.0%
1wi5A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.52e-01 89.5% 88.0%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.15e-01 100.0% 32.7%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 3.34e-01 100.0% 58.3%
2xgtB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.36e-01 100.0% 75.2%
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.54 40.0 2.39e-01 100.0% 9.3%
1f46B00 3.30.1400.10 Alpha Beta › 2-Layer Sandwich › Cell Division Protein Zipa; Chain: A, › ZipA, C-terminal FtsZ-binding domain 0.54 43.0 2.97e-01 89.5% 79.3%
2v3uA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 42.0 3.02e-01 97.4% 31.3%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 38.0 3.42e-01 94.7% 51.6%
1vw4H00 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.52 36.0 2.53e-01 71.1% 18.2%
4mptA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 40.0 2.75e-01 89.5% 63.9%
1cnzA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 38.0 2.35e-01 100.0% 43.3%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.51 44.0 2.57e-01 100.0% 18.1%
5suvC00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 42.0 3.02e-01 97.4% 39.2%
3mk7C01 6.10.280.130 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 3.29e-01 100.0% 53.2%
4up7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 37.0 2.74e-01 100.0% 52.6%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3893533 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.78 66.0 4.93e-01 100.0% 69.0%
4056471 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.76 60.0 4.81e-01 92.1% 50.0%
3258453 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.76 62.0 4.79e-01 100.0% 41.1%
4072685 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.75 61.0 5.09e-01 100.0% 56.0%
4117289 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.75 62.0 4.65e-01 97.4% 41.8%
2035461 3380.1.1.1 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.74 56.0 4.92e-01 81.6% 58.9%
4072752 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.74 60.0 4.61e-01 97.4% 43.2%
4462675 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.73 61.0 4.63e-01 100.0% 45.9%
4480316 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.72 56.0 4.58e-01 92.1% 50.0%
4193132 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.71 57.0 4.40e-01 100.0% 43.0%
3930705 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.71 58.0 4.46e-01 100.0% 55.0%
3587502 2.1.1.38 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RNB 0.71 58.0 4.70e-01 94.7% 81.3%
3221530 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.71 49.0 5.07e-01 76.3% 91.4%
3275475 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.71 53.0 3.31e-01 86.8% 44.3%
3252933 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.70 57.0 4.36e-01 100.0% 43.0%
4424609 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.70 55.0 5.07e-01 94.7% 67.9%
4679015 220.1.1.150 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.69 56.0 4.59e-01 100.0% 50.0%
5024226 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.69 49.0 4.67e-01 76.3% 64.4%
3714703 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.69 56.0 4.32e-01 100.0% 44.0%
4110889 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.69 54.0 4.11e-01 97.4% 40.0%
4069569 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.68 52.0 4.07e-01 94.7% 42.4%
3396958 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.68 55.0 4.09e-01 92.1% 85.0%
4965851 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.68 49.0 4.41e-01 81.6% 54.5%
3417244 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.68 56.0 4.35e-01 100.0% 44.2%
4573080 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.67 53.0 4.16e-01 100.0% 41.8%
3178127 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.67 55.0 5.14e-01 97.4% 74.0%
4088338 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.67 54.0 4.17e-01 100.0% 42.0%
4321937 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.67 55.0 4.52e-01 97.4% 50.7%
4112122 386.1.1.81 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1391 0.67 55.0 5.51e-01 100.0% 90.0%
4440746 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.67 52.0 3.77e-01 94.7% 32.8%
4602126 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 54.0 4.04e-01 100.0% 63.6%
3717796 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 51.0 3.15e-01 94.7% 13.8%
4402956 3675.1.1.0 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.66 52.0 3.51e-01 92.1% 99.4%
3537417 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 4.66e-01 84.2% 68.9%
4048026 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.66 53.0 4.15e-01 100.0% 43.2%
5036669 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.66 49.0 3.88e-01 94.7% 41.0%
3707684 243.11.1.0 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein 0.65 45.0 3.88e-01 73.7% 96.9%
3593086 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.65 49.0 2.87e-01 89.5% 13.8%
3801752 375.1.1.269 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29332 0.65 51.0 4.74e-01 89.5% 96.0%
4528716 3784.1.1.0 ↗ a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.64 51.0 3.87e-01 97.4% 50.5%
4948218 243.6.1.12 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.63 43.0 3.36e-01 71.1% 40.0%
2502895 2.27.1.0 ↗ beta barrels › OB-fold 0.63 51.0 4.26e-01 100.0% 67.5%
4967853 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.62 42.0 3.92e-01 78.9% 50.9%
3989262 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.62 48.0 4.54e-01 94.7% 70.0%
3265019 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 48.0 3.69e-01 100.0% 38.8%
3338602 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.61 51.0 3.33e-01 100.0% 34.1%
2426645 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.60 41.0 3.73e-01 73.7% 60.0%
3697550 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.59 45.0 3.73e-01 92.1% 46.3%
2701125 3146.1.1.1 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H 0.59 43.0 2.44e-01 78.9% 22.1%
3267918 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 4.26e-01 100.0% 69.1%
3813800 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.58 49.0 3.32e-01 100.0% 42.0%
3871872 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.58 44.0 3.70e-01 100.0% 45.0%
1578946 4967.1.1.15 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Birna_VP1_thumb 0.57 44.0 2.95e-01 89.5% 54.9%
3401559 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 42.0 3.74e-01 100.0% 52.3%
1713365 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.57 46.0 3.08e-01 100.0% 47.1%
3881310 386.1.1.233 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2 0.57 41.0 3.38e-01 86.8% 37.8%
1489902 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 46.0 3.55e-01 100.0% 47.2%
3516319 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.56 40.0 2.69e-01 78.9% 19.4%
2010840 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.55 45.0 2.71e-01 100.0% 11.5%
4597621 150.1.2.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Phenol_Hydrox 0.54 38.0 2.16e-01 76.3% 5.6%
3362766 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.53 39.0 3.76e-01 92.1% 70.0%
3922436 7523.1.1.20 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Lig_chan-Glu_bd 0.53 43.0 2.91e-01 97.4% 26.3%
3689915 109.4.1.1227 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPHP3_N 0.53 40.0 2.27e-01 97.4% 7.1%
5053378 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 39.0 2.81e-01 94.7% 74.3%
3591046 2002.3.1.2 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Polysacc_deac_1 0.50 39.0 2.36e-01 94.7% 40.5%
D2 medium residues 61-96
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5wpjB03 1.10.8.660 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.71 56.0 5.16e-01 97.2% 86.5%
3idwA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.68 58.0 4.81e-01 100.0% 81.8%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.62 48.0 3.92e-01 94.4% 70.1%
2deoB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.61 51.0 3.23e-01 100.0% 28.0%
7xi5A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 47.0 4.28e-01 88.9% 76.5%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.59 42.0 3.02e-01 80.6% 39.5%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 45.0 3.08e-01 88.9% 82.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3957740 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 47.0 3.53e-01 100.0% 30.9%