←Back to structures
MK359302.1__QAY04041.1__SEA_SOMBRERO_82__00081
Bact-VirMK359302.1__QAY04041.1__SEA_SOMBRERO_82__00081
Identity
- Accession:
- MK359302 ↗
- Kingdom:
- phage
Quality
76.3
mean pLDDT
Taxonomy
TaxID: 2502420
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-61
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.76 | 68.0 | 4.92e-01 | 100.0% | 97.5% |
| 3g9kF01 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.71 | 46.0 | 3.36e-01 | 80.0% | 24.5% |
| 2o3iA01 | 3.40.1610.10 | Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain | 0.69 | 50.0 | 3.34e-01 | 81.7% | 19.9% |
| 2kx2A00 | 3.30.780.30 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › | 0.67 | 49.0 | 4.25e-01 | 80.0% | 86.5% |
| 1tltA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.67 | 36.0 | 2.54e-01 | 73.3% | 16.7% |
| 2gacB00 | 3.60.20.30 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase | 0.64 | 48.0 | 3.62e-01 | 78.3% | 36.0% |
| 7wrgB01 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.64 | 48.0 | 3.04e-01 | 83.3% | 22.0% |
| 1kfiA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.63 | 46.0 | 3.67e-01 | 78.3% | 92.0% |
| 5c9iD01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.61 | 45.0 | 3.27e-01 | 78.3% | 71.4% |
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.60 | 44.0 | 3.76e-01 | 90.0% | 49.5% |
| 3flkA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.59 | 47.0 | 2.91e-01 | 86.7% | 76.0% |
| 1wdkC01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.59 | 44.0 | 2.96e-01 | 80.0% | 93.4% |
| 2mlbA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 36.0 | 3.34e-01 | 73.3% | 45.6% |
| 6le1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 41.0 | 3.94e-01 | 75.0% | 98.5% |
| 4hstA01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.57 | 41.0 | 3.05e-01 | 76.7% | 64.2% |
| 3ty4B00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.56 | 45.0 | 2.75e-01 | 86.7% | 74.5% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 43.0 | 3.06e-01 | 83.3% | 84.2% |
| 3cjlA00 | 3.10.20.850 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 | 0.56 | 43.0 | 3.81e-01 | 83.3% | 72.7% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.53 | 44.0 | 3.20e-01 | 88.3% | 71.5% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.52 | 38.0 | 3.62e-01 | 88.3% | 64.8% |
| 1apyB00 | 3.60.20.30 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase | 0.52 | 40.0 | 3.16e-01 | 88.3% | 53.2% |
| 6fndA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 41.0 | 2.87e-01 | 85.0% | 34.4% |
| 3zwbA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 37.0 | 2.37e-01 | 81.7% | 16.1% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4026684 | 192.20.1.7 ↗ | alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729 | 0.89 | 61.0 | 4.94e-01 | 71.7% | 61.0% |
| 4274656 | 263.1.1.0 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like | 0.86 | 58.0 | 4.28e-01 | 73.3% | 30.0% |
| 3899253 | 3957.1.1.0 ↗ | a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 | 0.81 | 58.0 | 6.52e-01 | 75.0% | 100.0% |
| 3798608 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.81 | 60.0 | 3.65e-01 | 78.3% | 32.1% |
| 5007978 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.75 | 69.0 | 5.21e-01 | 100.0% | 45.9% |
| 3418797 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.75 | 57.0 | 3.51e-01 | 81.7% | 71.2% |
| 3267836 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.74 | 56.0 | 5.18e-01 | 80.0% | 69.3% |
| 3623139 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.73 | 66.0 | 4.28e-01 | 100.0% | 25.6% |
| 4525886 | 109.4.1.1360 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p | 0.70 | 57.0 | 3.24e-01 | 88.3% | 34.7% |
| 5065366 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.70 | 57.0 | 4.53e-01 | 90.0% | 44.2% |
| 3959053 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 51.0 | 3.58e-01 | 76.7% | 25.4% |
| 3286928 | 245.2.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB | 0.70 | 49.0 | 5.12e-01 | 75.0% | 80.0% |
| 4905521 | 7584.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins | 0.70 | 56.0 | 4.09e-01 | 85.0% | 35.6% |
| 3300895 | 375.13.1.3 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › ubiquitin | 0.70 | 45.0 | 4.71e-01 | 78.3% | 72.7% |
| 3875765 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.69 | 59.0 | 3.67e-01 | 93.3% | 27.6% |
| 3617823 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.69 | 52.0 | 4.45e-01 | 80.0% | 95.7% |
| 3899800 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.67 | 52.0 | 3.75e-01 | 81.7% | 41.9% |
| 3256573 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.67 | 38.0 | 2.80e-01 | 80.0% | 20.6% |
| 3620592 | 6155.1.1.15 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 | 0.66 | 49.0 | 3.74e-01 | 78.3% | 48.6% |
| 3603146 | 2008.1.1.95 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII | 0.65 | 49.0 | 3.14e-01 | 80.0% | 56.8% |
| 4076048 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.64 | 52.0 | 3.51e-01 | 86.7% | 31.0% |
| 3773744 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.63 | 51.0 | 3.78e-01 | 91.7% | 73.3% |
| 3483062 | 221.1.1.116 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 | 0.63 | 48.0 | 3.87e-01 | 83.3% | 42.5% |
| 5026943 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 45.0 | 3.25e-01 | 76.7% | 27.3% |
| 3517822 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.60 | 41.0 | 3.32e-01 | 70.0% | 36.5% |
| 3471371 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 35.0 | 2.88e-01 | 80.0% | 31.8% |
| 4222853 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.60 | 51.0 | 4.11e-01 | 93.3% | 87.8% |
| 3675412 | 386.1.1.6 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 | 0.59 | 41.0 | 3.78e-01 | 73.3% | 97.5% |
| 3615029 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.59 | 43.0 | 3.87e-01 | 80.0% | 97.8% |
| 3502564 | 312.1.1.6 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 | 0.59 | 42.0 | 3.23e-01 | 76.7% | 88.5% |
| 4976198 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.59 | 48.0 | 4.35e-01 | 93.3% | 67.1% |
| 3684539 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.56 | 40.0 | 2.69e-01 | 75.0% | 20.9% |
| 3960522 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.56 | 43.0 | 3.97e-01 | 93.3% | 65.0% |
| 3275766 | 2007.2.3.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N | 0.56 | 46.0 | 2.97e-01 | 95.0% | 29.5% |
| 3316490 | 108.1.1.20 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like | 0.55 | 38.0 | 3.20e-01 | 75.0% | 41.9% |
| 3583046 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 35.0 | 3.67e-01 | 73.3% | 72.7% |
| 1392732 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.54 | 41.0 | 3.36e-01 | 83.3% | 83.5% |
| 3248524 | 7018.1.1.1 ↗ | few secondary structure elements › gp76 helical domain › gp76 helical domain › gp76 helical domain › FAM91_C | 0.54 | 45.0 | 3.14e-01 | 88.3% | 37.7% |
| 5030343 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.52 | 35.0 | 3.23e-01 | 85.0% | 54.7% |
| 3254341 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.52 | 38.0 | 2.56e-01 | 86.7% | 18.5% |