←Back to structures

MK373770.1__QBQ76561.1__WFI101126_00134__00133

Bact-Vir

MK373770.1__QBQ76561.1__WFI101126_00134__00133

Identity

Accession:
MK373770 ↗
Kingdom:
phage

Quality

72.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mtkvariviridae› Kuravirus› Escherichia_phage_vB_EcoP_WFI101126

TaxID: 2508203

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-71
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 55.0 4.59e-01 98.3% 49.5%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.69 59.0 5.07e-01 95.0% 73.4%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 34.0 3.81e-01 93.3% 62.5%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 35.0 3.66e-01 95.0% 56.4%
4uijA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.64 40.0 3.38e-01 100.0% 36.5%
4crhA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.61 36.0 3.14e-01 75.0% 35.1%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 47.0 3.95e-01 93.3% 65.5%
5a15A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.59 36.0 3.16e-01 80.0% 36.8%
5x2bD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 49.0 3.22e-01 95.0% 60.5%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 47.0 4.54e-01 91.7% 90.0%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 46.0 3.50e-01 93.3% 94.5%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.58 47.0 3.51e-01 100.0% 74.2%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.56 37.0 3.68e-01 98.3% 65.1%
4yy8B01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.56 33.0 3.14e-01 75.0% 43.6%
1kkhA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 47.0 3.41e-01 96.7% 48.1%
2kz5A00 1.10.880.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain 0.55 45.0 4.01e-01 93.3% 61.5%
1b25A01 3.60.9.10 Alpha Beta › 4-Layer Sandwich › Aldehyde Ferredoxin Oxidoreductase; A, domain 1 › Aldehyde ferredoxin oxidoreductase, N-terminal domain 0.55 45.0 3.17e-01 95.0% 88.5%
7neaA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.54 45.0 3.68e-01 98.3% 70.2%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.54 45.0 3.75e-01 100.0% 53.4%
5bxhA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.54 37.0 3.18e-01 71.7% 77.2%
1ex0B02 3.90.260.10 Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like 0.53 42.0 2.74e-01 91.7% 34.0%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.53 44.0 3.71e-01 93.3% 89.2%
2zxiA03 1.10.10.1800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA 0.52 44.0 3.87e-01 100.0% 72.2%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.52 40.0 4.03e-01 81.7% 100.0%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 42.0 3.16e-01 100.0% 57.6%
3h09B02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.51 40.0 2.38e-01 86.7% 19.6%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 38.0 2.99e-01 86.7% 78.7%
2hg7A00 3.30.56.60 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › XkdW-like 0.50 40.0 4.03e-01 93.3% 86.7%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 28.0 2.81e-01 75.0% 46.8%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3793268 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.72 42.0 3.44e-01 85.0% 31.8%
4474912 377.4.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › YlxR 0.72 59.0 5.28e-01 95.0% 77.8%
3619982 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.71 41.0 3.04e-01 83.3% 23.4%
3247695 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.71 41.0 3.29e-01 83.3% 30.9%
3790364 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.70 40.0 3.32e-01 83.3% 32.4%
3929070 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.67 39.0 3.12e-01 88.3% 29.2%
3590551 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.67 50.0 5.39e-01 95.0% 98.0%
3983493 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.66 50.0 5.37e-01 96.7% 100.0%
3936668 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.63 39.0 3.69e-01 83.3% 49.3%
3933769 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.62 39.0 3.10e-01 88.3% 30.8%
5015408 4.8.1.50 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF749 0.62 51.0 4.59e-01 96.7% 95.6%
3328453 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.62 39.0 3.20e-01 85.0% 33.9%
3627331 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.62 44.0 3.31e-01 100.0% 31.0%
5027285 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.62 47.0 3.51e-01 96.7% 32.3%
5053927 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.62 47.0 3.59e-01 96.7% 35.7%
4060755 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 3.58e-01 96.7% 35.7%
4982068 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.61 47.0 3.57e-01 98.3% 35.2%
3943344 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.60 50.0 3.77e-01 98.3% 38.6%
4991239 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 49.0 4.31e-01 95.0% 88.4%
3825666 206.1.1.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.59 45.0 2.96e-01 85.0% 91.0%
3615326 7039.1.1.0 ↗ a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM 0.59 48.0 3.27e-01 96.7% 31.2%
4262261 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.59 46.0 4.73e-01 86.7% 100.0%
3896089 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.59 46.0 4.21e-01 90.0% 84.7%
3259141 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.58 46.0 4.60e-01 91.7% 95.0%
4935756 242.2.1.0 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.57 44.0 4.58e-01 91.7% 96.4%
3834242 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.57 49.0 3.01e-01 95.0% 27.2%
3322876 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.57 48.0 2.93e-01 95.0% 24.6%
4995927 3715.1.1.0 ↗ a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e 0.56 42.0 3.66e-01 93.3% 53.3%
3659799 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 2.68e-01 95.0% 12.9%
4126797 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.56 44.0 4.45e-01 91.7% 93.3%
5031603 806.1.1.1 ↗ a+b four layers › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › AFOR_N 0.56 44.0 2.98e-01 95.0% 67.3%
3273830 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.55 48.0 2.93e-01 100.0% 24.4%
5055080 806.1.1.1 ↗ a+b four layers › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › AFOR_N 0.54 43.0 3.09e-01 95.0% 87.6%
3257428 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 42.0 2.71e-01 85.0% 43.0%
3211768 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 43.0 3.67e-01 91.7% 66.7%
3514278 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.53 42.0 2.89e-01 86.7% 26.2%
4408504 3171.1.1.0 ↗ alpha arrays › Nitrogenase gamma subunit N-terminal domain › Nitrogenase gamma subunit N-terminal domain › Nitrogenase gamma subunit N-terminal domain 0.52 42.0 3.88e-01 96.7% 87.1%
3847647 109.4.1.544 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ParcG 0.52 41.0 2.91e-01 86.7% 81.4%
4928066 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 40.0 2.94e-01 86.7% 66.3%
5040865 228.1.1.1 ↗ a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.51 36.0 2.86e-01 75.0% 61.7%
5001620 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.50 42.0 3.52e-01 93.3% 57.1%
3912026 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.50 39.0 3.22e-01 90.0% 45.6%