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MK373788.1__QBQ80187.1__Schickermooser_00034__00034

Bact-Vir

MK373788.1__QBQ80187.1__Schickermooser_00034__00034

Identity

Accession:
MK373788 ↗
Kingdom:
phage

Quality

92.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phapecoctavirus› Escherichia_phage_vB_EcoM_Schickermooser

TaxID: 2508195

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 53-128
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xppA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.83 37.0 2.94e-01 96.1% 24.1%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 5.30e-01 84.2% 100.0%
1qdmA03 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.64 45.0 4.51e-01 84.2% 72.7%
1au7A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 40.0 4.18e-01 73.7% 69.4%
5a72A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 44.0 3.50e-01 80.3% 62.4%
7apeB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 38.0 2.90e-01 71.1% 28.7%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 41.0 3.71e-01 96.1% 54.6%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 47.0 4.13e-01 97.4% 100.0%
5zorA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 38.0 3.94e-01 73.7% 90.4%
1guxB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 42.0 3.49e-01 85.5% 100.0%
3hc1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 42.0 2.92e-01 89.5% 66.8%
1dliA03 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 39.0 3.75e-01 82.9% 100.0%
1xb4B01 1.10.10.570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" 0.52 39.0 3.63e-01 85.5% 63.5%
1f4qA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 42.0 3.35e-01 94.7% 67.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4969809 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.79 61.0 5.35e-01 81.6% 80.9%
5032641 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.78 65.0 5.61e-01 88.2% 90.9%
3290651 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 54.0 4.52e-01 78.9% 54.6%
3956288 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.72 62.0 5.06e-01 93.4% 92.6%
5030856 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.71 61.0 5.20e-01 96.1% 96.8%
3589193 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 52.0 5.50e-01 89.5% 100.0%
3931733 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 48.0 4.66e-01 80.3% 80.0%
3487276 101.1.4.1 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.64 49.0 4.36e-01 81.6% 79.0%
5060128 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 45.0 4.77e-01 76.3% 98.5%
4048263 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.63 48.0 4.04e-01 84.2% 54.8%
3812799 101.1.1.291 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26175 0.61 44.0 4.68e-01 76.3% 90.8%
3649222 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.60 53.0 3.41e-01 97.4% 95.8%
3587762 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.59 39.0 3.77e-01 92.1% 58.0%
3785168 7094.1.1.2 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 0.59 51.0 4.65e-01 94.7% 82.0%
3164340 129.1.1.16 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 0.58 47.0 4.09e-01 92.1% 95.2%
3483986 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 43.0 4.05e-01 90.8% 63.2%
3798489 164.1.1.0 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.58 51.0 4.55e-01 100.0% 80.9%
3954386 101.1.1.248 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF772 0.58 44.0 3.89e-01 84.2% 61.7%
3362972 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.56 46.0 3.10e-01 92.1% 41.6%
4014310 149.1.1.0 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 0.55 44.0 2.75e-01 90.8% 66.3%
3280977 129.1.1.16 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 0.54 47.0 4.01e-01 97.4% 99.2%
3609215 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 34.0 3.43e-01 88.2% 61.3%
3605145 603.1.1.97 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.53 47.0 3.31e-01 98.7% 53.2%
3594317 603.1.1.1 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.51 45.0 3.62e-01 100.0% 52.1%