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MK373792.1__QBQ80828.1__VAH1_00221__00200

Bact-Vir

MK373792.1__QBQ80828.1__VAH1_00221__00200

Identity

Accession:
MK373792 ↗
Kingdom:
phage

Quality

75.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-65
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qvmB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 51.0 3.37e-01 98.3% 62.9%
1h1oA01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.56 48.0 4.51e-01 100.0% 100.0%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 35.0 2.77e-01 76.3% 30.8%
1miwA03 1.20.58.560 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 41.0 3.58e-01 86.4% 72.0%
6jd6B00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.54 38.0 2.76e-01 98.3% 24.0%
3lvqE03 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.53 37.0 3.80e-01 98.3% 76.3%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.80e-01 93.2% 78.2%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 42.0 4.00e-01 100.0% 77.8%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.51 44.0 3.53e-01 100.0% 48.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3392384 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 44.0 4.12e-01 100.0% 60.0%
4499345 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 39.0 4.14e-01 94.9% 78.0%
3787785 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 39.0 4.40e-01 96.6% 97.8%
3740673 11.2.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI3K_C2 0.54 36.0 2.45e-01 81.4% 18.6%
3886511 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.52 36.0 2.56e-01 98.3% 20.5%
3597691 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 36.0 3.81e-01 74.6% 92.3%
3789792 164.1.1.0 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.52 43.0 3.79e-01 98.3% 78.9%
3988311 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.51 33.0 3.13e-01 72.9% 53.3%
D2 high residues 69-113
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 38.0 2.62e-01 97.8% 43.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3908615 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.60 38.0 3.48e-01 84.4% 46.7%
5032731 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.52 42.0 2.51e-01 91.1% 12.5%