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MK387309.1__QAY17982.1__X__00028
Bact-VirMK387309.1__QAY17982.1__X__00028
Identity
- Accession:
- MK387309 ↗
- Kingdom:
- phage
Quality
88.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-69
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v1xA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 37.0 | 3.18e-01 | 92.5% | 35.5% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 32.0 | 3.28e-01 | 85.1% | 50.8% |
| 4ad8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 42.0 | 2.77e-01 | 73.1% | 24.7% |
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.60 | 49.0 | 3.65e-01 | 95.5% | 50.0% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.58 | 43.0 | 3.08e-01 | 80.6% | 45.7% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.58 | 42.0 | 2.89e-01 | 79.1% | 39.1% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.58 | 41.0 | 3.33e-01 | 76.1% | 43.3% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 38.0 | 4.04e-01 | 70.1% | 81.4% |
| 3fo3A02 | 1.10.1130.10 | Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A | 0.56 | 47.0 | 3.08e-01 | 100.0% | 65.1% |
| 3wgtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 42.0 | 3.05e-01 | 82.1% | 61.6% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 34.0 | 3.05e-01 | 98.5% | 41.7% |
| 3pieC05 | 2.170.260.40 | Mainly Beta › Beta Complex › paz domain › | 0.53 | 40.0 | 3.13e-01 | 85.1% | 34.1% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.52 | 36.0 | 3.27e-01 | 80.6% | 52.2% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.52 | 36.0 | 2.91e-01 | 73.1% | 45.9% |
| 2z86D02 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 38.0 | 2.64e-01 | 82.1% | 84.6% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.51 | 35.0 | 2.82e-01 | 73.1% | 43.5% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.28e-01 | 79.1% | 91.3% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 36.0 | 3.17e-01 | 76.1% | 50.0% |
| 2itmB02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 40.0 | 2.79e-01 | 88.1% | 50.9% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5075421 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.70 | 41.0 | 2.78e-01 | 73.1% | 16.2% |
| 3964934 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.64 | 45.0 | 2.62e-01 | 73.1% | 14.5% |
| 4970516 | 2003.6.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like | 0.63 | 34.0 | 2.67e-01 | 73.1% | 24.3% |
| 223314 | 4322.1.1.0 ↗ | a+b complex topology › Flu NP-like › Flu NP-like › Flu NP-like | 0.63 | 43.0 | 3.40e-01 | 71.6% | 40.1% |
| 4243626 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.62 | 44.0 | 2.68e-01 | 73.1% | 20.0% |
| 2764890 | 4322.1.1.1 ↗ | a+b complex topology › Flu NP-like › Flu NP-like › Flu NP-like › Flu_NP | 0.61 | 42.0 | 3.39e-01 | 71.6% | 46.3% |
| 3947636 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.61 | 43.0 | 2.57e-01 | 73.1% | 16.7% |
| 3404903 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.61 | 36.0 | 2.62e-01 | 92.5% | 20.5% |
| 3520689 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.60 | 53.0 | 3.47e-01 | 100.0% | 51.3% |
| 4328812 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.60 | 41.0 | 2.58e-01 | 71.6% | 21.0% |
| 3512028 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.59 | 52.0 | 3.48e-01 | 100.0% | 87.0% |
| 3306699 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.58 | 46.0 | 2.85e-01 | 86.6% | 24.2% |
| 1247620 | 101.1.1.72 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GP3_package | 0.58 | 42.0 | 3.32e-01 | 76.1% | 42.4% |
| 3578921 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.57 | 48.0 | 3.08e-01 | 100.0% | 53.9% |
| 3992826 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.56 | 46.0 | 2.93e-01 | 95.5% | 43.8% |
| 3494392 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.56 | 45.0 | 2.85e-01 | 89.6% | 50.8% |
| 3898373 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.55 | 45.0 | 3.10e-01 | 97.0% | 88.7% |
| 3941757 | 101.1.9.32 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT | 0.55 | 37.0 | 2.99e-01 | 70.1% | 66.2% |
| 4314672 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.54 | 36.0 | 3.19e-01 | 70.1% | 78.1% |
| 5044544 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 46.0 | 3.29e-01 | 100.0% | 99.6% |
| 3586391 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.54 | 43.0 | 2.97e-01 | 98.5% | 53.5% |
| 3694899 | 5069.1.1.71 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF3176 | 0.54 | 46.0 | 3.36e-01 | 100.0% | 56.5% |
| 3212571 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.54 | 43.0 | 2.68e-01 | 91.0% | 48.2% |
| 3216870 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.53 | 42.0 | 2.71e-01 | 89.6% | 53.0% |
| 3584118 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.53 | 43.0 | 2.77e-01 | 100.0% | 44.8% |
| 3586018 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 37.0 | 3.00e-01 | 76.1% | 38.6% |
| 3937747 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 44.0 | 2.96e-01 | 97.0% | 93.0% |
| 3238186 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.52 | 44.0 | 2.87e-01 | 100.0% | 50.1% |
| 3270655 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.52 | 45.0 | 3.06e-01 | 100.0% | 34.7% |
| 3485296 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 37.0 | 3.24e-01 | 76.1% | 51.4% |
| 3838659 | 5085.1.1.0 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.52 | 43.0 | 2.76e-01 | 100.0% | 55.8% |
| 4997255 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 3.35e-01 | 77.6% | 86.0% |
| 5028281 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.51 | 40.0 | 3.14e-01 | 91.0% | 97.1% |
| 3234312 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.51 | 41.0 | 2.71e-01 | 98.5% | 51.4% |
| 3220364 | 6166.1.1.1 ↗ | alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 | 0.50 | 43.0 | 3.15e-01 | 100.0% | 93.0% |
| 3488760 | 3937.1.1.0 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 | 0.50 | 36.0 | 2.39e-01 | 77.6% | 56.7% |
| 5003912 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 41.0 | 3.15e-01 | 92.5% | 81.9% |