←Back to structures
MK387309.1__QAY17986.1__X__00032
Bact-VirMK387309.1__QAY17986.1__X__00032
Identity
- Accession:
- MK387309 ↗
- Kingdom:
- phage
Quality
75.8
mean pLDDT
Cluster
View cluster (116 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-83
Domain cluster:
rep: MZ375300.1__QZB86124.1__seszw30S_13__00015__D21-83
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.73 | 57.0 | 5.14e-01 | 100.0% | 61.1% |
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.73 | 60.0 | 5.36e-01 | 100.0% | 64.5% |
| 1uz5A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.68 | 61.0 | 6.06e-01 | 100.0% | 95.8% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.65 | 59.0 | 5.72e-01 | 100.0% | 93.5% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.65 | 58.0 | 5.68e-01 | 98.6% | 100.0% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.65 | 57.0 | 5.68e-01 | 98.6% | 100.0% |
| 1r5bA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 45.0 | 4.21e-01 | 100.0% | 64.0% |
| 2yweA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 44.0 | 3.95e-01 | 100.0% | 57.0% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 32.0 | 3.24e-01 | 87.0% | 55.9% |
| 1x67A01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 37.0 | 3.05e-01 | 78.3% | 83.5% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.87 | 77.0 | 7.73e-01 | 100.0% | 94.3% |
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.81 | 57.0 | 6.35e-01 | 97.1% | 92.7% |
| 3602933 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.79 | 65.0 | 6.70e-01 | 98.6% | 92.3% |
| 5022524 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.78 | 59.0 | 5.91e-01 | 100.0% | 78.6% |
| 4963571 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.78 | 59.0 | 6.06e-01 | 100.0% | 84.6% |
| 5016125 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.76 | 57.0 | 6.30e-01 | 100.0% | 100.0% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.75 | 68.0 | 6.62e-01 | 98.6% | 94.7% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.73 | 57.0 | 4.89e-01 | 100.0% | 53.2% |
| 2526359 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.72 | 56.0 | 5.93e-01 | 100.0% | 95.0% |
| 4937267 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.69 | 54.0 | 4.57e-01 | 98.6% | 50.0% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.69 | 53.0 | 5.69e-01 | 95.7% | 95.0% |
| 5033307 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.68 | 56.0 | 4.48e-01 | 100.0% | 45.0% |
| 4991571 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.68 | 62.0 | 5.89e-01 | 100.0% | 93.8% |
| 4956897 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.68 | 62.0 | 5.87e-01 | 100.0% | 95.0% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.68 | 54.0 | 5.69e-01 | 100.0% | 98.3% |
| 4960949 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.67 | 60.0 | 5.71e-01 | 100.0% | 92.5% |
| 4950136 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.66 | 58.0 | 5.63e-01 | 95.7% | 94.7% |
| 4975116 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.66 | 59.0 | 5.65e-01 | 100.0% | 92.5% |
| 3603211 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.65 | 57.0 | 5.50e-01 | 100.0% | 91.3% |
| 4990371 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.65 | 57.0 | 5.77e-01 | 100.0% | 97.1% |
| 4617493 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.64 | 57.0 | 5.46e-01 | 100.0% | 93.8% |
| 3398750 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.64 | 57.0 | 5.43e-01 | 100.0% | 95.0% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.63 | 54.0 | 5.58e-01 | 98.6% | 100.0% |
| 3516152 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.63 | 56.0 | 5.25e-01 | 100.0% | 95.3% |
| None | — | 0.59 | 44.0 | 4.00e-01 | 100.0% | 57.0% | |
| 3951104 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.58 | 40.0 | 4.14e-01 | 100.0% | 77.8% |
| 4477675 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.57 | 37.0 | 3.29e-01 | 100.0% | 43.8% |
| 4158768 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.57 | 42.0 | 3.80e-01 | 100.0% | 54.3% |
D2
high
residues 88-146
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.83 | 75.0 | 6.28e-01 | 100.0% | 61.1% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.70 | 64.0 | 4.92e-01 | 100.0% | 55.3% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.67 | 58.0 | 5.39e-01 | 100.0% | 90.9% |
| 1a1rA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 47.0 | 4.21e-01 | 98.3% | 60.0% |
| 2olgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 47.0 | 3.84e-01 | 100.0% | 47.0% |
| 3cp7B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 42.0 | 3.61e-01 | 98.3% | 46.7% |
| 5jpmH01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 45.0 | 3.55e-01 | 100.0% | 43.0% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.53 | 44.0 | 3.36e-01 | 94.9% | 91.8% |
| 4tkoB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 45.0 | 4.36e-01 | 100.0% | 100.0% |
| 3r0hG01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 44.0 | 3.79e-01 | 100.0% | 88.1% |
| 3p26A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 44.0 | 3.66e-01 | 100.0% | 61.8% |
| 1vjqA00 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.51 | 35.0 | 3.37e-01 | 100.0% | 60.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.89 | 80.0 | 8.09e-01 | 98.3% | 96.6% |
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.83 | 68.0 | 6.82e-01 | 100.0% | 88.1% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.82 | 73.0 | 5.88e-01 | 100.0% | 53.2% |
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.81 | 69.0 | 7.17e-01 | 100.0% | 100.0% |
| 4988093 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.81 | 73.0 | 5.99e-01 | 100.0% | 67.3% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.77 | 68.0 | 6.29e-01 | 98.3% | 94.7% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.77 | 69.0 | 5.76e-01 | 100.0% | 60.0% |
| 4990371 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.70 | 62.0 | 5.88e-01 | 100.0% | 97.1% |
| 3398931 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.59 | 49.0 | 3.24e-01 | 100.0% | 21.6% |
| 3500739 | 1.1.7.66 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Trypsin | 0.59 | 48.0 | 4.16e-01 | 100.0% | 56.8% |
| 4315579 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.54 | 46.0 | 3.73e-01 | 100.0% | 60.8% |
| 4032708 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 35.0 | 3.07e-01 | 100.0% | 45.3% |
| 5044495 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 42.0 | 4.05e-01 | 100.0% | 95.7% |