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MK387309.1__QAY17989.1__X__00035
Bact-VirMK387309.1__QAY17989.1__X__00035
Identity
- Accession:
- MK387309 ↗
- Kingdom:
- phage
Quality
81.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-114
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k1gA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.65 | 35.0 | 3.35e-01 | 70.0% | 45.0% |
| 4oijA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 27.0 | 3.18e-01 | 88.2% | 76.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3282690 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.65 | 34.0 | 3.39e-01 | 86.4% | 45.8% |
| 2444014 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.59 | 32.0 | 3.00e-01 | 82.7% | 40.8% |
| 4032608 | 2004.1.1.225 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MFD_D3 | 0.51 | 36.0 | 3.75e-01 | 92.7% | 77.1% |
D2
medium
residues 132-209
Domain cluster:
rep: NC_028887.1__YP_009206384.1__AVV02_gp029__00029__D73-135
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pvlA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 41.0 | 4.16e-01 | 70.5% | 94.7% |
| 2egeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 39.0 | 4.05e-01 | 74.4% | 93.3% |
| 1okeB02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.52 | 36.0 | 3.63e-01 | 71.8% | 77.9% |
| 1nkiA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 34.0 | 2.85e-01 | 70.5% | 49.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3604145 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 56.0 | 6.40e-01 | 70.5% | 93.3% |
| 5001903 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 57.0 | 6.00e-01 | 71.8% | 80.0% |
| 4973749 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 56.0 | 5.92e-01 | 71.8% | 80.0% |
| 4936291 | 4.1.1.487 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7205 | 0.80 | 56.0 | 6.11e-01 | 71.8% | 89.2% |
| 4953054 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 55.0 | 5.61e-01 | 71.8% | 74.7% |
| 4975764 | 4.1.1.485 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6897 | 0.77 | 53.0 | 5.59e-01 | 71.8% | 78.6% |
| 4020558 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 45.0 | 4.89e-01 | 70.5% | 98.5% |
| 3883895 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.67 | 45.0 | 4.20e-01 | 70.5% | 77.0% |
| 3585447 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.65 | 45.0 | 4.55e-01 | 73.1% | 81.2% |