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MK387309.1__QAY18017.1__X__00063
Bact-VirMK387309.1__QAY18017.1__X__00063
Identity
- Accession:
- MK387309 ↗
- Kingdom:
- phage
Quality
75.8
mean pLDDT
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 54-123
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5k3hA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.59 | 37.0 | 3.19e-01 | 91.4% | 37.2% |
| 2ddhA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.58 | 38.0 | 3.22e-01 | 95.7% | 39.0% |
| 2dofA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.56 | 34.0 | 3.24e-01 | 72.9% | 49.4% |
| 1lvlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 45.0 | 3.27e-01 | 91.4% | 30.4% |
| 6xm1A02 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.53 | 46.0 | 3.97e-01 | 98.6% | 90.3% |
| 4lypB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 39.0 | 2.47e-01 | 95.7% | 13.7% |
| 3rvyA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.51 | 40.0 | 3.53e-01 | 90.0% | 67.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3760661 | 109.4.1.472 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAI16-like | 0.57 | 44.0 | 2.99e-01 | 84.3% | 62.5% |
| 4627741 | 604.30.1.3 ↗ | alpha bundles › Spectrin repeat-like › Gamma-secretase subunit PEN-2 › Gamma-secretase subunit PEN-2 › PF29950 | 0.52 | 44.0 | 3.86e-01 | 100.0% | 64.9% |
| 3719682 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.52 | 41.0 | 3.51e-01 | 87.1% | 56.7% |
| 3990854 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.51 | 35.0 | 3.31e-01 | 72.9% | 85.6% |
D2
medium
residues 124-256
Domain cluster:
rep: MG209611.1__ATW59280.1__Cl131_gp012__00012__D104-225
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iw3A05 | 2.40.50.990 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 29.0 | 3.13e-01 | 80.5% | 60.6% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 27.0 | 3.22e-01 | 80.5% | 73.8% |
| 1v29B02 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 33.0 | 3.81e-01 | 71.4% | 87.6% |
| 5zwzA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 23.0 | 2.99e-01 | 77.4% | 77.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031151 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.79 | 45.0 | 5.93e-01 | 80.5% | 100.0% |
| 3948451 | 4056.1.1.8 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_3 | 0.75 | 54.0 | 6.23e-01 | 78.9% | 100.0% |
| 4910146 | 4056.1.1.3 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Portal_Gp20 | 0.69 | 46.0 | 5.44e-01 | 87.2% | 97.8% |
| 3977478 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.64 | 46.0 | 5.27e-01 | 81.2% | 100.0% |
| 5082725 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.63 | 46.0 | 5.26e-01 | 81.2% | 100.0% |
| 3806777 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.58 | 30.0 | 3.80e-01 | 81.2% | 85.3% |
| 3607981 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 30.0 | 3.81e-01 | 72.9% | 89.2% |
| 3782292 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.56 | 33.0 | 4.03e-01 | 79.7% | 95.0% |
| 3445197 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.54 | 27.0 | 2.83e-01 | 74.4% | 50.0% |
| 3441179 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.52 | 27.0 | 2.85e-01 | 75.2% | 51.2% |
| 3110784 | 4056.1.1.4 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con | 0.52 | 41.0 | 4.31e-01 | 83.5% | 100.0% |
| 3729666 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 27.0 | 2.96e-01 | 72.2% | 57.3% |
| 160765 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.51 | 30.0 | 3.77e-01 | 82.0% | 100.0% |
| 3546727 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.51 | 31.0 | 3.37e-01 | 78.9% | 72.2% |
D3
medium
residues 404-443