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MK387337.2__QAU04461.1__Va1_053__00018

Bact-Vir

MK387337.2__QAU04461.1__Va1_053__00018

Identity

Accession:
MK387337 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_Va1

TaxID: 2508852

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-148
PDB
Domain cluster: rep: MN497415.1__QGH73801.1__X__00010__D3-143
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 28.0 3.19e-01 81.9% 61.1%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 29.0 3.76e-01 89.9% 93.2%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.54 29.0 3.76e-01 89.9% 95.9%
4yx1A00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.53 21.0 2.87e-01 83.3% 69.6%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.97e-01 96.4% 83.9%
4jpbW02 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.50 27.0 3.40e-01 77.5% 88.6%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3468906 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 34.0 4.21e-01 87.7% 85.9%
3943027 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 34.0 4.38e-01 91.3% 98.7%
3573692 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 43.0 4.55e-01 85.5% 86.6%
5047563 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 32.0 4.09e-01 74.6% 100.0%
3287981 2.1.1.94 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.54 30.0 3.90e-01 87.0% 98.7%
3234465 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.54 35.0 3.51e-01 100.0% 62.5%
3424450 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.54 38.0 3.81e-01 92.8% 71.4%
3725926 2.1.1.94 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.53 33.0 4.00e-01 82.6% 100.0%
3822890 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.53 38.0 3.88e-01 92.0% 74.3%
3827585 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.53 37.0 4.19e-01 92.0% 95.2%
3677576 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.53 37.0 3.87e-01 92.8% 76.9%
4041729 2.1.1.78 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PCB_OB 0.51 31.0 3.61e-01 83.3% 86.3%
5049738 2.1.1.94 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.51 30.0 3.75e-01 87.7% 100.0%
D2 high residues 151-247
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00102__D151-226_283-313
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 43.0 4.19e-01 71.1% 90.7%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.61 46.0 5.16e-01 83.5% 100.0%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.57e-01 74.2% 93.2%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 3.63e-01 78.4% 48.3%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.07e-01 71.1% 92.8%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 40.0 4.07e-01 72.2% 93.6%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.57 36.0 3.21e-01 83.5% 43.8%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 42.0 3.48e-01 79.4% 56.7%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.56 39.0 4.03e-01 74.2% 80.6%
7jptA05 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 42.0 3.82e-01 82.5% 90.6%
4jivD00 2.60.200.60 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 35.0 3.62e-01 73.2% 92.5%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.50 39.0 3.67e-01 80.4% 100.0%
2qqpA03 2.60.40.4260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 37.0 3.35e-01 78.4% 95.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3907178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.73e-01 79.4% 98.1%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 41.0 4.99e-01 77.3% 100.0%
3960279 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.63 44.0 3.90e-01 73.2% 76.6%
3203392 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 42.0 3.16e-01 72.2% 48.6%
3322460 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.60 45.0 4.28e-01 79.4% 72.2%
3184389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 46.0 3.78e-01 82.5% 85.7%
3764452 4.8.1.41 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF4708 0.59 44.0 4.12e-01 78.4% 96.7%
3234035 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.59 47.0 4.38e-01 84.5% 87.5%
4650682 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.56 42.0 3.81e-01 79.4% 83.8%
4195869 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.56 42.0 3.81e-01 82.5% 73.6%
5032809 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.55 38.0 3.45e-01 79.4% 52.3%
3253267 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 4.27e-01 78.4% 90.6%
3861569 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.55 37.0 3.57e-01 70.1% 73.0%
3175156 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 38.0 4.39e-01 74.2% 100.0%
3782292 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.53 37.0 4.10e-01 72.2% 95.0%
3881192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.55e-01 86.6% 55.3%
D3 high residues 250-383
PDB