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MK387337.2__QAU04497.1__Va1_144__00054
Bact-VirMK387337.2__QAU04497.1__Va1_144__00054
Identity
- Accession:
- MK387337 ↗
- Kingdom:
- phage
Quality
95.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-68
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d2gA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 46.0 | 3.46e-01 | 86.4% | 86.7% |
| 2lrrA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.57 | 43.0 | 4.25e-01 | 98.5% | 78.6% |
| 3evzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 43.0 | 3.37e-01 | 86.4% | 86.7% |
| 2cpmA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.53 | 41.0 | 3.69e-01 | 98.5% | 60.6% |
| 5bkeC00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.52 | 45.0 | 2.98e-01 | 100.0% | 83.7% |
| 3bzbB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 39.0 | 2.91e-01 | 86.4% | 78.0% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 42.0 | 3.82e-01 | 93.9% | 71.9% |
| 3bjnA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 39.0 | 3.06e-01 | 87.9% | 45.7% |
| 2qubA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 39.0 | 2.57e-01 | 84.8% | 65.7% |
| 2rbbA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 44.0 | 3.56e-01 | 98.5% | 73.6% |
| 1wduB00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.50 | 37.0 | 2.72e-01 | 84.8% | 70.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 153276 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.57 | 43.0 | 4.25e-01 | 98.5% | 78.6% |
| 5024779 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.55 | 41.0 | 3.70e-01 | 84.8% | 64.1% |
| None | — | 0.54 | 41.0 | 2.73e-01 | 84.8% | 51.1% | |
| 3288258 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.51 | 43.0 | 3.50e-01 | 97.0% | 72.3% |
D2
high
residues 74-127
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.67 | 49.0 | 3.78e-01 | 79.6% | 59.2% |
| 1smpI00 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.66 | 57.0 | 4.74e-01 | 100.0% | 88.0% |
| 2jn4A00 | 2.40.50.240 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like | 0.66 | 52.0 | 4.88e-01 | 87.0% | 83.3% |
| 2ec1A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 52.0 | 4.28e-01 | 100.0% | 73.7% |
| 1a1xA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.62 | 49.0 | 3.99e-01 | 88.9% | 86.8% |
| 3rlfF02 | 3.10.650.10 | Alpha Beta › Roll › MalF N-terminal region-like › MalF N-terminal region-like | 0.61 | 50.0 | 4.40e-01 | 100.0% | 61.0% |
| 2l6oA01 | 2.40.10.320 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain | 0.59 | 48.0 | 4.39e-01 | 88.9% | 91.7% |
| 4l1nA00 | 2.40.128.660 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 | 0.59 | 43.0 | 3.10e-01 | 79.6% | 31.1% |
| 4kcaA03 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 49.0 | 4.17e-01 | 100.0% | 94.8% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 42.0 | 4.39e-01 | 100.0% | 95.7% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 40.0 | 3.50e-01 | 100.0% | 46.7% |
| 5wt7A00 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.56 | 45.0 | 3.54e-01 | 100.0% | 65.0% |
| 1whmA01 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.56 | 49.0 | 4.48e-01 | 100.0% | 98.6% |
| 4hwmA00 | 2.40.128.500 | Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein | 0.56 | 45.0 | 3.71e-01 | 100.0% | 55.6% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.55 | 45.0 | 3.29e-01 | 100.0% | 80.8% |
| 3tdqA00 | 2.40.50.320 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF | 0.55 | 43.0 | 3.75e-01 | 88.9% | 75.6% |
| 1hxdA03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 39.0 | 4.10e-01 | 98.1% | 100.0% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.54 | 43.0 | 3.77e-01 | 100.0% | 76.8% |
| 3lqmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.09e-01 | 100.0% | 42.2% |
| 2yvlA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.52 | 42.0 | 4.19e-01 | 100.0% | 86.2% |
| 3da7E00 | 3.40.20.20 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › | 0.52 | 45.0 | 3.67e-01 | 98.1% | 99.0% |
| 1yi9A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 38.0 | 2.82e-01 | 100.0% | 30.7% |
| 2ic2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 34.0 | 2.91e-01 | 72.2% | 77.9% |
| 2cryA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 34.0 | 2.89e-01 | 72.2% | 74.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078307 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.70 | 56.0 | 4.98e-01 | 100.0% | 62.7% |
| 4404324 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 56.0 | 4.95e-01 | 100.0% | 78.8% |
| 917 | 4087.1.1.1 ↗ | beta barrels › NifT/FixU › NifT/FixU › NifT/FixU › NifT | 0.66 | 52.0 | 4.88e-01 | 87.0% | 83.3% |
| 5063311 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.63 | 46.0 | 4.93e-01 | 98.1% | 97.8% |
| 4957377 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.62 | 45.0 | 4.35e-01 | 100.0% | 68.3% |
| 5003618 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.61 | 44.0 | 4.74e-01 | 100.0% | 95.6% |
| 5029405 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.60 | 46.0 | 4.59e-01 | 100.0% | 83.6% |
| 4985100 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 44.0 | 4.53e-01 | 100.0% | 88.0% |
| 3529940 | 292.2.1.11 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34_2nd | 0.57 | 40.0 | 3.44e-01 | 77.8% | 80.2% |
| 3279083 | 4.6.1.7 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PF26205 | 0.57 | 49.0 | 4.47e-01 | 100.0% | 82.7% |
| 4044269 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.56 | 43.0 | 4.03e-01 | 100.0% | 68.6% |
| 5058457 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.55 | 43.0 | 4.09e-01 | 100.0% | 73.8% |
| 3590813 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.55 | 39.0 | 4.07e-01 | 77.8% | 80.0% |
| 3401434 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 41.0 | 3.51e-01 | 85.2% | 93.7% |
| 3602276 | 881.4.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 | 0.53 | 46.0 | 3.49e-01 | 100.0% | 77.8% |
| 4951062 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.52 | 45.0 | 4.43e-01 | 100.0% | 90.0% |
| 5042178 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.51 | 45.0 | 4.36e-01 | 100.0% | 90.0% |