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MK387337.2__QAU04572.1__Va1_294__00129

Bact-Vir

MK387337.2__QAU04572.1__Va1_294__00129

Identity

Accession:
MK387337 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

Taxonomy

TaxID: 2508852

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-94
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.72 43.0 4.29e-01 77.5% 57.6%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 45.0 3.24e-01 73.0% 92.0%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 44.0 3.97e-01 83.1% 53.3%
3q6kA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 44.0 2.90e-01 73.0% 45.3%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 53.0 4.31e-01 92.1% 49.7%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 44.0 3.00e-01 74.2% 38.4%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 43.0 2.90e-01 71.9% 35.9%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 42.0 2.80e-01 70.8% 23.6%
8djfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 42.0 2.98e-01 71.9% 46.8%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 42.0 2.90e-01 75.3% 33.9%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 41.0 2.82e-01 73.0% 40.8%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 41.0 2.82e-01 74.2% 20.8%
6p2lA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 41.0 2.84e-01 73.0% 26.5%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 42.0 3.34e-01 75.3% 65.5%
4ozuA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 41.0 2.75e-01 73.0% 40.3%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.63e-01 76.4% 48.2%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.58 40.0 3.58e-01 82.0% 48.1%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 44.0 3.17e-01 85.4% 62.3%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 39.0 3.70e-01 71.9% 88.1%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 41.0 2.79e-01 77.5% 23.4%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 39.0 2.60e-01 73.0% 34.5%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 38.0 2.54e-01 70.8% 33.5%
6fh1B01 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.55 39.0 2.82e-01 73.0% 68.2%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.81e-01 79.8% 38.9%
3sh4A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 2.98e-01 74.2% 66.7%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 39.0 2.79e-01 77.5% 40.5%
4wvmA04 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.53 40.0 3.14e-01 79.8% 92.3%
5uc6A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 38.0 3.21e-01 75.3% 70.2%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 3.19e-01 71.9% 65.2%
3ffvA00 3.40.1580.20 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Syd protein 0.51 39.0 3.14e-01 82.0% 69.6%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 44.0 3.08e-01 97.8% 62.5%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.51 39.0 3.07e-01 80.9% 66.5%
4z9mB02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.51 37.0 2.92e-01 77.5% 65.7%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.68e-01 83.1% 87.5%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 36.0 3.16e-01 73.0% 94.0%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.51 39.0 2.89e-01 83.1% 83.1%
3pveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 34.0 2.83e-01 71.9% 61.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3259155 376.1.1.43 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PRT6_C 0.69 47.0 4.24e-01 70.8% 84.0%
3672651 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 50.0 3.99e-01 78.7% 67.1%
3273270 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 45.0 3.27e-01 70.8% 43.1%
3379168 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.65 44.0 5.04e-01 70.8% 100.0%
5791 295.1.1.6 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.63 43.0 3.95e-01 80.9% 52.9%
4238933 5.1.4.49 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PSII_BNR 0.63 44.0 3.03e-01 71.9% 38.0%
3817626 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.62 45.0 3.65e-01 77.5% 46.7%
3207771 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.62 43.0 3.34e-01 71.9% 50.8%
3643744 5.1.4.122 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.62 46.0 3.22e-01 78.7% 30.0%
3719029 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.61 44.0 3.54e-01 74.2% 61.8%
3690349 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.61 45.0 2.82e-01 78.7% 16.4%
143915 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.61 42.0 2.82e-01 71.9% 29.5%
3191562 5.1.4.229 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.61 46.0 2.93e-01 80.9% 28.9%
7054 881.2.1.1 a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like › DUF3242 0.61 42.0 3.80e-01 82.0% 51.2%
3665166 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 43.0 2.95e-01 74.2% 52.4%
3284638 4205.1.1.3 a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 0.60 42.0 3.61e-01 76.4% 44.8%
3434352 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 46.0 3.24e-01 86.5% 25.2%
3599752 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 41.0 2.66e-01 70.8% 27.7%
4030034 109.4.1.1140 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PEP5_VPS11 0.59 41.0 2.59e-01 71.9% 20.6%
3599903 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 45.0 2.93e-01 80.9% 39.7%
145091 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.59 42.0 2.90e-01 75.3% 33.9%
4971345 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 41.0 3.99e-01 77.5% 67.0%
3607492 5.1.4.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.57 43.0 2.81e-01 79.8% 37.5%
3681159 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 41.0 2.85e-01 77.5% 30.6%
3392173 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 42.0 2.94e-01 78.7% 86.8%
4003785 5.1.3.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.56 39.0 2.76e-01 73.0% 28.1%
3998243 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 48.0 3.26e-01 95.5% 53.5%
3718321 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 43.0 2.70e-01 83.1% 20.4%
3423257 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.55 46.0 3.15e-01 95.5% 63.9%
4525386 210.1.2.2 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH 0.55 39.0 2.68e-01 73.0% 97.7%
4003966 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.55 40.0 3.26e-01 75.3% 47.1%
3981268 210.1.2.2 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH 0.55 39.0 2.69e-01 75.3% 81.8%
3302115 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.55 38.0 2.63e-01 71.9% 24.6%
3076054 210.1.2.2 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH 0.55 40.0 2.74e-01 77.5% 99.1%
3223920 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 33.0 3.57e-01 78.7% 72.0%
3960559 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 44.0 3.93e-01 86.5% 81.3%
3228995 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.54 38.0 2.38e-01 75.3% 11.8%
3820070 5.1.2.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › FBA_1 0.54 40.0 3.03e-01 79.8% 46.7%
3601875 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 41.0 3.91e-01 82.0% 100.0%
3514491 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.53 41.0 2.71e-01 83.1% 46.2%
3647885 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.53 43.0 3.06e-01 92.1% 79.7%
4025506 5.1.4.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.53 44.0 2.94e-01 93.3% 93.9%
3179616 5.1.4.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.53 43.0 2.85e-01 91.0% 93.3%
3254115 5.1.4.56 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 0.53 45.0 2.90e-01 96.6% 89.4%
3830535 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 40.0 2.85e-01 83.1% 48.3%
3888167 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 39.0 2.81e-01 79.8% 41.5%
3505956 5.1.3.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.52 40.0 2.91e-01 85.4% 57.9%
4432481 4205.1.1.1 a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › Syd 0.52 39.0 3.13e-01 80.9% 72.2%
3244937 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 38.0 2.78e-01 78.7% 27.6%
3812754 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 40.0 3.07e-01 87.6% 70.4%
3736331 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.89e-01 98.9% 62.7%
4955729 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 40.0 3.29e-01 86.5% 77.1%
3239304 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.50 35.0 2.72e-01 71.9% 31.2%
D2 high residues 97-190
PDB
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 41.0 4.62e-01 96.8% 78.1%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.29e-01 92.6% 72.6%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 32.0 4.31e-01 85.1% 100.0%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 39.0 3.26e-01 92.6% 37.8%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.53 43.0 3.40e-01 89.4% 85.3%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 47.0 4.11e-01 100.0% 88.3%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 42.0 3.75e-01 90.4% 93.9%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 32.0 3.03e-01 91.5% 50.9%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 34.0 3.50e-01 95.7% 73.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3508441 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 43.0 4.30e-01 96.8% 60.0%
3866571 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.63 45.0 2.84e-01 100.0% 15.5%
3664869 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.59 53.0 4.06e-01 100.0% 77.7%
3520311 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.59 46.0 4.28e-01 100.0% 67.0%
3591693 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 51.0 4.65e-01 97.9% 86.9%
4942135 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.58 48.0 4.47e-01 92.6% 99.2%
3705404 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.57 50.0 3.70e-01 97.9% 84.7%
3719639 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.52e-01 97.9% 91.2%
3434094 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.57 49.0 4.91e-01 95.7% 95.8%
3717986 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 43.0 4.04e-01 97.9% 69.6%
3608011 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 49.0 4.52e-01 98.9% 86.7%
3658643 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 45.0 3.86e-01 100.0% 57.9%
4029991 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 2.87e-01 87.2% 32.0%
3601624 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 47.0 4.60e-01 98.9% 92.4%
3707345 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.54e-01 91.5% 97.8%
3713672 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 46.0 4.33e-01 98.9% 88.7%
3713571 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 45.0 4.36e-01 97.9% 89.5%
3218203 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 45.0 3.84e-01 100.0% 90.3%
3718969 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 45.0 3.66e-01 97.9% 83.4%