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MK388859.1__QBA84947.1__X__00006

Bact-Vir

MK388859.1__QBA84947.1__X__00006

Identity

Accession:
MK388859 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ig1A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.73 49.0 3.03e-01 70.2% 42.1%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.72 65.0 4.65e-01 100.0% 94.4%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.72 56.0 4.27e-01 86.0% 36.9%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.69 52.0 4.08e-01 86.0% 63.4%
1wduB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.67 48.0 3.28e-01 84.2% 20.5%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.66 60.0 4.43e-01 100.0% 48.9%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.66 51.0 3.35e-01 84.2% 37.0%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 44.0 3.17e-01 70.2% 48.4%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.65 53.0 4.86e-01 93.0% 73.1%
4qtpD00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.65 44.0 3.60e-01 93.0% 35.7%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.64 51.0 3.65e-01 94.7% 68.6%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 56.0 3.94e-01 100.0% 33.3%
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 48.0 4.52e-01 89.5% 100.0%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.62 49.0 3.65e-01 86.0% 43.6%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 43.0 3.09e-01 77.2% 47.3%
3w5xA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.61 46.0 4.13e-01 89.5% 58.7%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.60 50.0 4.14e-01 98.2% 54.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 44.0 3.81e-01 80.7% 77.2%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 44.0 3.79e-01 80.7% 75.5%
2ob0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 46.0 3.50e-01 93.0% 60.5%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.59 42.0 3.15e-01 75.4% 46.1%
1vrmA01 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.59 43.0 2.91e-01 96.5% 21.2%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 3.99e-01 89.5% 100.0%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.58 48.0 3.06e-01 100.0% 71.4%
1q9jB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.58 42.0 2.95e-01 77.2% 80.1%
3pm9A04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 3.91e-01 86.0% 89.7%
2gj8D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 49.0 3.56e-01 100.0% 75.0%
3h90A02 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.56 43.0 3.84e-01 87.7% 57.1%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 48.0 3.36e-01 94.7% 31.7%
3bypA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.56 45.0 4.01e-01 87.7% 61.0%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 42.0 2.99e-01 86.0% 80.5%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 40.0 3.59e-01 86.0% 56.4%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 43.0 3.70e-01 98.2% 80.7%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 2.87e-01 71.9% 36.1%
3kxyT00 6.20.290.10 Special › Other non-globular › Dna Ligase; domain 1 › 0.52 31.0 2.99e-01 84.2% 50.8%
3ue3A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.52 41.0 3.65e-01 98.2% 62.9%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 2.72e-01 98.2% 29.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 42.0 3.96e-01 98.2% 73.2%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 36.0 3.14e-01 89.5% 45.8%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 2.88e-01 98.2% 22.9%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.51 40.0 4.03e-01 94.7% 85.0%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.63e-01 82.5% 33.6%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.50 36.0 3.44e-01 80.7% 83.1%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049862 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 54.0 3.75e-01 70.2% 24.6%
3982740 5086.1.1.190 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP 0.78 58.0 3.94e-01 80.7% 45.5%
3907411 5001.1.1.111 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.74 63.0 3.80e-01 89.5% 23.9%
4183868 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.74 60.0 5.41e-01 98.2% 64.6%
4983992 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.74 53.0 3.88e-01 98.2% 28.4%
3879591 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.73 61.0 3.71e-01 89.5% 24.0%
None 0.71 62.0 3.81e-01 96.5% 25.4%
4985406 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.70 56.0 5.02e-01 96.5% 63.3%
5006770 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.70 55.0 3.95e-01 94.7% 30.6%
4001707 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.69 62.0 5.43e-01 100.0% 69.4%
3905302 284.1.3.8 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 0.69 62.0 5.42e-01 100.0% 68.2%
4991990 878.1.1.0 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.69 57.0 4.72e-01 96.5% 52.0%
5078000 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.69 55.0 3.49e-01 89.5% 26.1%
5056727 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.68 58.0 3.90e-01 93.0% 64.4%
3857887 5094.1.1.11 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 0.68 61.0 5.57e-01 100.0% 77.3%
3560901 601.19.1.20 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.68 61.0 5.54e-01 100.0% 77.3%
3774738 7529.1.1.11 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 0.68 60.0 5.27e-01 100.0% 68.2%
4927759 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.68 53.0 3.85e-01 94.7% 30.6%
3925690 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.68 59.0 5.36e-01 96.5% 76.0%
4988512 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.67 56.0 3.92e-01 93.0% 30.9%
4998031 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.66 57.0 3.97e-01 93.0% 45.1%
4647118 5086.1.1.119 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › RRG1_C 0.66 58.0 3.84e-01 100.0% 24.9%
4026684 192.20.1.7 alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729 0.66 60.0 4.83e-01 100.0% 65.7%
5037750 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.65 51.0 3.61e-01 91.2% 94.4%
3959570 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.65 50.0 3.63e-01 96.5% 30.0%
4931277 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.65 57.0 4.09e-01 96.5% 54.2%
5065366 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.64 54.0 4.26e-01 100.0% 45.0%
3487129 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.64 48.0 4.17e-01 82.5% 75.6%
3586391 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.63 50.0 3.19e-01 91.2% 17.4%
5052078 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.63 46.0 4.14e-01 87.7% 56.2%
5055279 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.63 54.0 3.75e-01 100.0% 75.6%
4564327 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.62 47.0 4.20e-01 94.7% 56.6%
3723552 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.62 52.0 3.05e-01 93.0% 43.7%
4856500 135.1.1.1 alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha 0.61 36.0 4.22e-01 73.7% 97.1%
3962463 4011.1.1.0 beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.61 44.0 4.54e-01 98.2% 81.8%
3233889 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 54.0 3.44e-01 98.2% 33.6%
5039979 604.2.1.1 alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.61 52.0 4.05e-01 100.0% 57.8%
3798829 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.61 55.0 3.64e-01 100.0% 58.7%
4954522 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.61 52.0 4.49e-01 100.0% 60.6%
4031138 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 39.0 3.86e-01 75.4% 63.3%
4304389 5086.1.1.119 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › RRG1_C 0.60 50.0 3.35e-01 100.0% 24.1%
3890772 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.59 44.0 4.06e-01 82.5% 61.3%
5071431 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.59 47.0 4.33e-01 91.2% 66.7%
5073101 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.59 44.0 4.07e-01 84.2% 61.3%
3998663 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 40.0 3.84e-01 93.0% 58.6%
3175336 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 47.0 4.30e-01 91.2% 65.3%
3259141 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.58 41.0 4.07e-01 86.0% 70.0%
3167354 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.58 51.0 4.75e-01 100.0% 93.2%
5051076 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.58 47.0 4.20e-01 96.5% 62.5%
3433449 323.1.1.7 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.58 42.0 2.73e-01 80.7% 84.2%
3961647 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.58 45.0 4.12e-01 91.2% 64.0%
3215682 101.1.1.7 alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18 0.57 43.0 3.35e-01 87.7% 36.2%
3217990 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 35.0 2.48e-01 71.9% 18.4%
3326759 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.56 48.0 4.41e-01 98.2% 73.3%
3553091 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 45.0 3.06e-01 87.7% 61.0%
4608174 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.55 47.0 4.06e-01 98.2% 61.1%
4848452 135.1.1.1 alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha 0.55 36.0 3.78e-01 80.7% 77.6%
3679515 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 37.0 4.08e-01 86.0% 88.9%
3600134 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 37.0 3.15e-01 86.0% 41.0%
4975755 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.54 43.0 3.81e-01 93.0% 58.8%
5050683 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 44.0 3.43e-01 100.0% 40.8%
3739985 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.53 43.0 3.07e-01 86.0% 70.3%
5029930 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.59e-01 96.5% 53.0%
3879162 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 32.0 2.82e-01 96.5% 40.0%