Back to structures

MK388859.1__QBA84949.1__X__00008

Bact-Vir

MK388859.1__QBA84949.1__X__00008

Identity

Accession:
MK388859 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.72 51.0 4.69e-01 85.0% 57.7%
1xkpB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.71 51.0 4.08e-01 83.3% 38.0%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.71 53.0 4.15e-01 83.3% 37.7%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.69 61.0 4.64e-01 98.3% 50.4%
4zudA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.68 57.0 3.68e-01 91.7% 32.4%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 57.0 3.97e-01 93.3% 87.8%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.67 53.0 3.53e-01 90.0% 35.1%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 60.0 4.35e-01 100.0% 96.3%
4qtpD00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.66 44.0 3.64e-01 90.0% 36.5%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.66 51.0 3.25e-01 100.0% 17.8%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.65 55.0 3.95e-01 98.3% 41.9%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.65 52.0 4.07e-01 90.0% 67.2%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.62 47.0 3.00e-01 83.3% 68.6%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.62 51.0 3.29e-01 98.3% 70.2%
3h90A02 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.61 47.0 4.24e-01 90.0% 59.5%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 47.0 4.06e-01 85.0% 78.7%
3pm9A04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 45.0 4.05e-01 85.0% 57.5%
3w5xA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.60 45.0 4.18e-01 88.3% 62.5%
3maeA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.60 48.0 3.26e-01 91.7% 24.8%
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 54.0 4.76e-01 100.0% 75.6%
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 45.0 4.33e-01 86.7% 97.3%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.59 43.0 2.94e-01 81.7% 37.9%
1wduB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.58 41.0 2.89e-01 76.7% 21.0%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.58 43.0 3.01e-01 85.0% 27.4%
2o18A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.57 49.0 3.14e-01 100.0% 46.6%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.57 49.0 3.67e-01 95.0% 45.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 41.0 3.66e-01 78.3% 79.3%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 41.0 2.76e-01 83.3% 19.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 45.0 3.28e-01 90.0% 61.1%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 38.0 3.69e-01 91.7% 64.6%
4dg8A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.55 36.0 3.15e-01 78.3% 43.5%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 39.0 3.53e-01 83.3% 58.5%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.53 37.0 2.88e-01 75.0% 52.5%
3kxyT00 6.20.290.10 Special › Other non-globular › Dna Ligase; domain 1 › 0.53 31.0 3.09e-01 80.0% 52.3%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 44.0 3.07e-01 91.7% 32.8%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 2.85e-01 90.0% 67.7%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 3.54e-01 96.7% 83.1%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 39.0 2.80e-01 83.3% 81.1%
2fuqA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.51 40.0 2.57e-01 88.3% 22.7%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.51 36.0 3.52e-01 78.3% 84.5%
2uuxA01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.51 27.0 3.33e-01 86.7% 86.1%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 42.0 3.53e-01 90.0% 69.7%
2gj8D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 3.03e-01 95.0% 76.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959570 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.76 57.0 4.18e-01 93.3% 30.6%
4991990 878.1.1.0 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.75 61.0 5.16e-01 93.3% 54.0%
4988512 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.74 54.0 3.71e-01 75.0% 52.2%
4026684 192.20.1.7 alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729 0.72 52.0 4.28e-01 98.3% 43.8%
3774738 7529.1.1.11 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 0.70 63.0 5.58e-01 100.0% 70.6%
3684015 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.70 52.0 4.34e-01 98.3% 47.0%
4001707 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.70 63.0 5.58e-01 100.0% 72.9%
3905302 284.1.3.8 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 0.70 63.0 5.58e-01 100.0% 70.6%
3857887 5094.1.1.11 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 0.70 61.0 5.66e-01 96.7% 77.3%
5053157 2004.5.1.0 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.69 53.0 3.41e-01 81.7% 22.9%
3560901 601.19.1.20 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.69 61.0 5.62e-01 96.7% 77.3%
4954522 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.69 60.0 5.20e-01 100.0% 62.8%
5006770 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.69 54.0 4.04e-01 88.3% 87.5%
5049862 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 52.0 3.72e-01 81.7% 36.0%
3265334 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.68 55.0 4.61e-01 91.7% 52.7%
4183868 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.68 52.0 4.81e-01 100.0% 64.6%
3925690 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.67 56.0 5.25e-01 93.3% 77.3%
4564327 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.67 49.0 4.46e-01 96.7% 57.8%
4987228 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.67 52.0 3.81e-01 98.3% 30.8%
5078000 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.67 48.0 3.11e-01 78.3% 39.1%
3962463 4011.1.1.0 beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.67 50.0 5.15e-01 100.0% 87.3%
3998663 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 44.0 4.19e-01 88.3% 58.6%
3921728 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 54.0 4.45e-01 95.0% 89.6%
4998031 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.65 50.0 3.60e-01 83.3% 37.0%
4983992 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.64 53.0 3.91e-01 90.0% 48.4%
3586391 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.64 59.0 3.67e-01 100.0% 63.2%
3907411 5001.1.1.111 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.64 54.0 3.33e-01 98.3% 17.0%
3982740 5086.1.1.190 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP 0.64 53.0 3.67e-01 98.3% 27.5%
4927759 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.63 52.0 3.82e-01 90.0% 47.5%
3433449 323.1.1.7 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.63 45.0 2.90e-01 78.3% 84.5%
4495385 5.1.3.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.62 47.0 2.92e-01 81.7% 85.4%
5065366 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.62 50.0 4.00e-01 95.0% 45.0%
3708645 230.4.1.0 a+b two layers › T-fold › ApbE-like › ApbE-like 0.61 54.0 4.53e-01 100.0% 58.1%
4980263 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.61 44.0 4.13e-01 83.3% 60.0%
5055279 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.61 51.0 3.60e-01 98.3% 77.6%
3798829 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.60 47.0 3.27e-01 90.0% 88.9%
5073101 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.60 45.0 4.20e-01 88.3% 65.3%
4856500 135.1.1.1 alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha 0.60 35.0 4.24e-01 71.7% 100.0%
3890772 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.59 42.0 3.97e-01 78.3% 61.3%
3580898 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 45.0 3.34e-01 85.0% 38.1%
3733364 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.58 43.0 2.64e-01 80.0% 19.8%
3995477 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 36.0 3.69e-01 85.0% 67.3%
5050683 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 42.0 3.35e-01 80.0% 73.6%
3217990 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 34.0 2.46e-01 71.7% 18.4%
3175336 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 45.0 4.20e-01 95.0% 69.3%
4608174 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.56 48.0 4.18e-01 95.0% 63.3%
3487129 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 43.0 3.72e-01 81.7% 74.4%
3367891 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.55 37.0 2.28e-01 81.7% 13.1%
3326759 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.54 45.0 4.22e-01 100.0% 76.0%
3233889 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 43.0 2.89e-01 93.3% 33.6%
4848452 135.1.1.1 alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha 0.53 34.0 3.61e-01 76.7% 77.6%
3259141 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 37.0 3.75e-01 76.7% 76.7%
4977735 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 40.0 2.95e-01 88.3% 91.4%
3215682 101.1.1.7 alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18 0.51 39.0 3.05e-01 81.7% 46.2%
3553091 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 37.0 2.64e-01 78.3% 50.5%
3167354 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.51 43.0 4.08e-01 100.0% 86.3%
5029930 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 44.0 3.67e-01 93.3% 92.0%
3606376 304.55.2.8 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › FAZ1_cons 0.50 45.0 3.76e-01 100.0% 58.1%