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MK388859.1__QBA84951.1__X__00010

Bact-Vir

MK388859.1__QBA84951.1__X__00010

Identity

Accession:
MK388859 ↗
Kingdom:
phage

Quality

95.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 62.0 6.03e-01 86.2% 76.9%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 67.0 6.18e-01 96.6% 74.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 66.0 5.94e-01 94.8% 75.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.77 69.0 5.04e-01 100.0% 59.6%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.75 67.0 4.98e-01 100.0% 62.8%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 64.0 6.26e-01 94.8% 95.2%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 63.0 5.74e-01 93.1% 76.3%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.74 66.0 4.90e-01 100.0% 72.4%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 62.0 6.09e-01 100.0% 85.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 62.0 5.90e-01 98.3% 80.9%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 5.48e-01 87.9% 74.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.54e-01 89.7% 78.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 5.75e-01 91.4% 88.7%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 63.0 5.82e-01 100.0% 91.9%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 60.0 6.05e-01 96.6% 93.2%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.60e-01 84.5% 87.5%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 59.0 4.55e-01 100.0% 78.0%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 60.0 4.63e-01 100.0% 60.4%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.68 61.0 5.18e-01 100.0% 72.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 4.92e-01 94.8% 63.7%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 4.68e-01 94.8% 54.0%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 56.0 4.55e-01 100.0% 76.9%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 4.93e-01 84.5% 95.2%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.65 54.0 4.20e-01 96.6% 96.4%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 5.31e-01 91.4% 94.5%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 53.0 4.47e-01 96.6% 62.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 52.0 5.06e-01 96.6% 94.0%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 42.0 4.36e-01 70.7% 92.2%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.61 46.0 4.07e-01 100.0% 53.8%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.61 45.0 3.96e-01 100.0% 52.2%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 50.0 3.74e-01 100.0% 46.8%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 48.0 3.85e-01 93.1% 94.4%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 49.0 3.90e-01 98.3% 46.4%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 41.0 4.17e-01 79.3% 89.3%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 42.0 4.26e-01 84.5% 91.1%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.56 44.0 3.61e-01 100.0% 65.2%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.73e-01 93.1% 66.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.56 41.0 3.30e-01 81.0% 58.9%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 39.0 4.00e-01 75.9% 92.3%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.31e-01 89.7% 96.7%
4eq8A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 43.0 3.43e-01 100.0% 47.5%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.73e-01 93.1% 83.6%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 40.0 3.43e-01 82.8% 61.7%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.55 44.0 3.83e-01 98.3% 78.8%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.69e-01 86.2% 78.5%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.30e-01 77.6% 87.5%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.88e-01 77.6% 80.3%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 3.48e-01 91.4% 100.0%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.68e-01 96.6% 20.8%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.37e-01 94.8% 90.5%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 44.0 4.15e-01 96.6% 75.3%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.53 44.0 2.95e-01 100.0% 57.2%
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 39.0 3.36e-01 82.8% 50.0%
5xyib00 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.52 43.0 3.87e-01 91.4% 80.5%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.52 36.0 3.39e-01 93.1% 56.6%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 38.0 3.63e-01 86.2% 76.0%
4adiA01 2.60.98.30 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Rubella membrane glycoprotein E1, domain 1 0.52 40.0 3.77e-01 89.7% 83.1%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.50 43.0 2.64e-01 94.8% 85.8%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 38.0 3.23e-01 87.9% 59.6%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 65.0 6.68e-01 89.7% 96.4%
3405627 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 65.0 5.47e-01 89.7% 55.8%
4110119 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 69.0 5.47e-01 96.6% 50.0%
3629455 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.78 70.0 4.81e-01 100.0% 71.6%
3936496 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 69.0 5.67e-01 96.6% 57.0%
3507146 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 67.0 5.88e-01 94.8% 65.9%
3478898 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 63.0 6.09e-01 89.7% 81.5%
None 0.77 62.0 4.43e-01 89.7% 58.8%
3997949 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 66.0 5.64e-01 96.6% 61.1%
4093836 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 66.0 6.61e-01 96.6% 96.7%
3629536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 66.0 5.57e-01 96.6% 62.1%
3222051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 63.0 6.13e-01 96.6% 81.5%
3488114 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 66.0 5.14e-01 96.6% 47.5%
3176265 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.75 66.0 4.76e-01 96.6% 43.9%
3521904 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 5.68e-01 100.0% 89.5%
4271974 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.75 61.0 5.94e-01 89.7% 84.4%
3834563 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.74 64.0 5.73e-01 94.8% 80.0%
3210653 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 5.97e-01 93.1% 87.7%
4929262 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.74 62.0 4.62e-01 96.6% 41.3%
3549321 4.11.1.5 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.74 63.0 4.55e-01 94.8% 43.1%
3564972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 64.0 6.04e-01 96.6% 81.4%
3798312 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 63.0 5.95e-01 96.6% 91.4%
3935716 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 63.0 5.84e-01 96.6% 85.3%
3621303 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.01e-01 100.0% 65.4%
3449268 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.44e-01 96.6% 63.5%
3487837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 64.0 4.44e-01 100.0% 34.0%
3684567 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.73 58.0 5.60e-01 89.7% 78.5%
3660358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 63.0 6.27e-01 96.6% 91.7%
3484606 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.73 64.0 5.66e-01 100.0% 80.0%
3725153 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.72 63.0 5.70e-01 98.3% 75.0%
3395948 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.72 59.0 6.04e-01 89.7% 94.5%
3568329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 6.26e-01 96.6% 95.0%
3607981 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.80e-01 96.6% 86.5%
3226827 4.1.1.133 beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.71 62.0 5.08e-01 96.6% 62.9%
3245045 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 63.0 4.33e-01 100.0% 33.5%
4964768 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 61.0 6.10e-01 96.6% 95.0%
3630782 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 63.0 4.70e-01 100.0% 51.0%
4956443 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 62.0 6.18e-01 96.6% 96.7%
3927213 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 62.0 5.89e-01 100.0% 94.3%
3673944 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 63.0 4.66e-01 100.0% 43.0%
3576128 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 61.0 4.88e-01 96.6% 51.3%
3176049 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 62.0 5.82e-01 96.6% 81.2%
3501834 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.43e-01 98.3% 100.0%
4317035 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 60.0 5.30e-01 96.6% 64.7%
3502388 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.58e-01 96.6% 74.7%
3471771 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 60.0 6.15e-01 94.8% 98.2%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.69 54.0 5.31e-01 89.7% 90.8%
3823780 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.69 61.0 5.64e-01 100.0% 86.7%
4387111 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 58.0 5.31e-01 98.3% 90.0%
3725498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.24e-01 91.4% 94.3%
4060133 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 57.0 5.00e-01 100.0% 71.1%
3594578 4.18.1.0 beta barrels › SH3 › Plus3 › Plus3 0.66 57.0 4.52e-01 98.3% 55.0%
4266069 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.65 57.0 4.70e-01 98.3% 84.8%
4072524 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.65 57.0 4.65e-01 100.0% 62.7%
3241067 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.46e-01 98.3% 57.3%
4023972 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 54.0 4.57e-01 100.0% 62.9%
4990503 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.62 50.0 4.08e-01 96.6% 53.6%
3646521 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.61 47.0 4.38e-01 84.5% 85.3%
2582102 3338.2.1.2 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.61 50.0 3.87e-01 91.4% 51.9%
5042797 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.60 53.0 5.26e-01 100.0% 96.7%
4949773 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.60 49.0 3.80e-01 98.3% 39.3%
3511551 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.69e-01 96.6% 96.7%
4610859 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 46.0 4.49e-01 94.8% 89.2%
3967111 3338.2.1.2 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.57 44.0 3.56e-01 89.7% 64.8%
3278636 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 44.0 3.46e-01 94.8% 84.5%
4950482 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 46.0 4.32e-01 100.0% 73.3%
3525376 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 42.0 4.16e-01 89.7% 90.8%
3989353 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.55 42.0 3.42e-01 87.9% 58.4%
3538619 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 42.0 3.35e-01 87.9% 66.9%
4995694 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 40.0 4.08e-01 81.0% 90.9%
3953729 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 37.0 3.14e-01 79.3% 55.8%
3974565 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.52 39.0 3.84e-01 86.2% 78.5%
3588223 304.156.1.0 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain 0.51 41.0 3.60e-01 89.7% 100.0%
4993656 1.1.1.3 beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.50 39.0 3.18e-01 87.9% 58.3%