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MK411746.1__QAY16140.1__SEA_SONALI_28__00028

Bact-Vir

MK411746.1__QAY16140.1__SEA_SONALI_28__00028

Identity

Accession:
MK411746 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-112
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00565.24 best SNase 21.9 2.90e-04 71.6% 69.2%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qmgA02 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.92 85.0 7.36e-01 100.0% 67.4%
1a2tA00 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.89 85.0 7.59e-01 100.0% 76.3%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.87 73.0 6.74e-01 100.0% 71.4%
4qmgC01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.84 80.0 6.71e-01 100.0% 68.6%
5ygbA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.82 78.0 7.00e-01 100.0% 97.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 33.0 4.16e-01 84.3% 64.1%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.77 54.0 6.05e-01 88.2% 92.5%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 49.0 4.58e-01 85.3% 55.3%
3ntkB01 2.40.50.790 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 58.0 6.29e-01 95.1% 97.7%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.72 52.0 5.94e-01 100.0% 98.7%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 49.0 5.56e-01 84.3% 94.8%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 53.0 5.47e-01 84.3% 91.8%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 48.0 5.30e-01 84.3% 93.8%
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 50.0 4.71e-01 94.1% 66.1%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 51.0 5.45e-01 84.3% 93.3%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 53.0 5.29e-01 94.1% 95.2%
7k98B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 4.68e-01 92.2% 79.8%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 43.0 4.05e-01 97.1% 68.0%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 38.0 3.28e-01 74.5% 89.2%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 43.0 3.93e-01 99.0% 67.6%
1eujA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 46.0 3.95e-01 100.0% 94.5%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385491 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.96 85.0 7.03e-01 100.0% 58.1%
3965688 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.95 85.0 7.56e-01 100.0% 69.6%
4928964 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.95 84.0 8.00e-01 100.0% 80.9%
4954340 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.95 84.0 7.82e-01 100.0% 77.5%
3194464 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.93 90.0 7.37e-01 100.0% 66.7%
5066799 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.93 88.0 8.58e-01 98.0% 98.1%
5054098 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.92 80.0 7.36e-01 100.0% 73.6%
3738104 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.92 89.0 7.28e-01 100.0% 67.9%
4968397 2.6.1.8 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › N6_N4_Mtase 0.92 78.0 4.93e-01 100.0% 21.2%
4935079 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.91 88.0 7.95e-01 100.0% 95.4%
5069938 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.91 76.0 7.55e-01 98.0% 83.8%
3392076 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.91 88.0 7.20e-01 100.0% 66.1%
3599639 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.90 88.0 7.46e-01 100.0% 70.0%
4589357 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.90 88.0 7.27e-01 100.0% 63.7%
3807059 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.90 87.0 6.86e-01 100.0% 82.2%
3785402 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.90 86.0 7.19e-01 100.0% 68.8%
3599041 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.90 86.0 7.41e-01 99.0% 75.9%
4966291 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.90 76.0 7.00e-01 100.0% 72.0%
4965290 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.90 86.0 7.37e-01 100.0% 79.3%
3949229 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 86.0 7.43e-01 100.0% 72.4%
3730357 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 84.0 7.37e-01 100.0% 71.4%
3611847 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 83.0 6.83e-01 100.0% 60.0%
3609631 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 85.0 7.23e-01 99.0% 73.3%
4929215 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.89 80.0 7.51e-01 100.0% 80.0%
5031365 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 85.0 6.51e-01 100.0% 55.1%
4180654 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 86.0 7.40e-01 100.0% 70.3%
4261758 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 85.0 7.09e-01 100.0% 68.1%
4673831 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.89 85.0 6.92e-01 100.0% 69.4%
3972842 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.88 83.0 7.54e-01 99.0% 76.9%
3930254 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.88 84.0 7.13e-01 100.0% 73.5%
3615202 2.6.1.2 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › RIF5_SNase_2 0.88 84.0 7.22e-01 100.0% 80.5%
4033114 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.88 84.0 7.61e-01 100.0% 78.5%
3713167 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.88 79.0 6.85e-01 100.0% 66.2%
3366163 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.87 83.0 6.94e-01 100.0% 66.9%
4026269 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.86 82.0 7.24e-01 100.0% 76.4%
3634014 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.86 82.0 7.21e-01 100.0% 72.9%
3535178 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.86 70.0 6.48e-01 100.0% 69.6%
3407824 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.85 70.0 7.15e-01 100.0% 88.0%
3609624 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.85 77.0 6.72e-01 100.0% 66.9%
4023463 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.85 81.0 6.98e-01 100.0% 68.7%
3596659 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.85 77.0 6.46e-01 100.0% 60.6%
3402597 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.84 74.0 7.09e-01 100.0% 81.7%
3558931 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.84 80.0 6.71e-01 100.0% 73.1%
4510334 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.83 79.0 7.27e-01 100.0% 80.8%
3797164 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.83 72.0 6.91e-01 100.0% 80.9%
3504269 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.82 75.0 7.29e-01 100.0% 90.0%
3463367 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.81 47.0 5.14e-01 83.3% 69.4%
3577387 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.81 77.0 7.33e-01 100.0% 94.8%
4926947 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.81 65.0 4.65e-01 83.3% 59.7%
3576127 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.81 63.0 6.74e-01 96.1% 93.3%
3410967 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.80 65.0 6.74e-01 99.0% 90.5%
4119295 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.78 58.0 6.28e-01 88.2% 91.8%
4663095 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.76 69.0 6.57e-01 100.0% 84.0%
4141240 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.75 51.0 5.76e-01 84.3% 90.0%
3482680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 33.0 4.06e-01 85.3% 64.6%
4683474 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.71 49.0 5.48e-01 84.3% 90.0%
3256260 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 56.0 5.61e-01 84.3% 89.5%
4194126 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.70 48.0 5.41e-01 84.3% 90.0%
3936025 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.68 53.0 5.40e-01 83.3% 94.0%
3578391 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 46.0 4.73e-01 90.2% 75.8%
4270702 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.66 46.0 5.13e-01 84.3% 92.5%
4933497 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 50.0 5.04e-01 94.1% 80.0%
3593304 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 50.0 4.63e-01 84.3% 65.6%
3590404 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 50.0 4.98e-01 84.3% 98.1%
4341488 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.62 43.0 4.82e-01 83.3% 97.3%
3784708 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.61 43.0 4.71e-01 82.4% 88.2%
3179638 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 49.0 4.34e-01 84.3% 67.1%
4026991 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 47.0 4.27e-01 84.3% 77.6%
4929480 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.59 53.0 4.59e-01 99.0% 78.1%
5003053 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.58 53.0 4.60e-01 100.0% 80.6%
4949965 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.58 53.0 4.57e-01 100.0% 78.1%
3706267 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 46.0 3.84e-01 85.3% 63.4%
4964966 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.58 52.0 4.53e-01 100.0% 80.6%
5031245 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.57 51.0 4.51e-01 100.0% 92.0%
3577361 2.1.1.215 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_1st 0.57 43.0 4.41e-01 84.3% 84.0%
3491823 2.1.1.133 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF4503 0.56 50.0 3.49e-01 97.1% 65.7%
5024242 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.56 51.0 4.43e-01 100.0% 76.8%
4255589 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.53 42.0 4.31e-01 99.0% 89.0%
133860 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.52 42.0 4.12e-01 99.0% 78.8%