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MK411746.1__QAY16142.1__SEA_SONALI_30__00030

Bact-Vir

MK411746.1__QAY16142.1__SEA_SONALI_30__00030

Identity

Accession:
MK411746 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sonalivirus› Arthrobacter_phage_Sonali

TaxID: 2510495

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-77
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00138__D6-73
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.68 35.0 2.64e-01 100.0% 19.9%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.65 39.0 3.14e-01 100.0% 31.4%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 49.0 4.87e-01 84.9% 93.4%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.62 54.0 5.17e-01 100.0% 97.6%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.58 36.0 4.31e-01 98.6% 97.8%
6nffA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 48.0 3.20e-01 100.0% 33.4%
2qkbA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 40.0 3.21e-01 78.1% 95.4%
1lnsA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 45.0 3.09e-01 100.0% 34.0%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.53 39.0 3.09e-01 100.0% 38.8%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 31.0 3.05e-01 97.3% 50.6%
2hu8A02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 3.06e-01 100.0% 45.6%
3m4rA01 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.51 42.0 3.05e-01 100.0% 32.8%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990926 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.69 35.0 4.14e-01 97.3% 72.0%
4997648 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.65 34.0 4.04e-01 98.6% 74.0%
4969863 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 46.0 4.64e-01 84.9% 94.7%
4960640 304.165.1.4 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › HVO_2525_N 0.60 40.0 3.27e-01 71.2% 97.9%
4188823 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.57 49.0 3.90e-01 100.0% 63.1%
4364336 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.54 30.0 3.32e-01 97.3% 67.3%
3929121 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.46e-01 82.2% 52.2%
4890504 330.1.1.21 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5_C 0.52 31.0 3.21e-01 97.3% 59.2%
3961641 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.51 45.0 2.97e-01 100.0% 24.1%
5025789 281.1.1.1 ↗ a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II 0.51 43.0 2.98e-01 100.0% 29.3%
3598520 75.1.1.0 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.50 42.0 3.10e-01 98.6% 82.3%