←Back to structures
MK416010.1__QBQ71747.1__X__00001
Bact-VirMK416010.1__QBQ71747.1__X__00001
Identity
- Accession:
- MK416010 ↗
- Kingdom:
- phage
Quality
94.9
mean pLDDT
Taxonomy
TaxID: 2510477
Cluster
View cluster (62 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-157_246-280
Domain cluster:
rep: MW584157.1__QSM02054.1__PROPHIGD68-1_78__00076__D7-250
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04055.28 best | Radical_SAM | 59.1 | 8.70e-16 | 86.1% | 86.8% |
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4k36B00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.94 | 92.0 | 7.08e-01 | 100.0% | 76.6% |
| 4r33A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.72 | 66.0 | 5.18e-01 | 98.9% | 74.5% |
| 4qtpD00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.70 | 36.0 | 4.49e-01 | 81.8% | 80.0% |
| 1r30A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.68 | 62.0 | 5.20e-01 | 97.9% | 81.7% |
| 2zsjA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 33.0 | 4.47e-01 | 73.3% | 99.0% |
| 4cqbA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.61 | 54.0 | 4.57e-01 | 93.6% | 85.0% |
| 2p9bA03 | 3.40.50.10910 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Amidohydrolase | 0.61 | 39.0 | 4.75e-01 | 80.7% | 96.8% |
| 4ovxA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.61 | 44.0 | 3.87e-01 | 81.3% | 50.7% |
| 2ex2A02 | 3.50.80.20 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 | 0.58 | 31.0 | 4.12e-01 | 91.4% | 95.1% |
| 3e02A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 53.0 | 4.49e-01 | 100.0% | 85.1% |
| 5bwiA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 54.0 | 4.52e-01 | 100.0% | 95.4% |
| 8b73B01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 53.0 | 4.42e-01 | 100.0% | 93.2% |
| 3wnkA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 52.0 | 4.17e-01 | 95.2% | 80.1% |
| 4fk1A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 34.0 | 4.35e-01 | 85.6% | 100.0% |
| 4z0tA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 44.0 | 4.02e-01 | 80.7% | 97.1% |
| 1k77A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.56 | 43.0 | 3.88e-01 | 81.3% | 68.0% |
| 6xehA01 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 33.0 | 4.18e-01 | 81.3% | 99.1% |
| 3bleA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 50.0 | 4.29e-01 | 100.0% | 87.0% |
| 4ur7A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 51.0 | 4.31e-01 | 100.0% | 94.7% |
| 3oy2A01 | 3.40.50.11930 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 42.0 | 4.57e-01 | 81.3% | 95.0% |
| 3bf0C03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.54 | 44.0 | 4.63e-01 | 91.4% | 94.6% |
| 1tq8A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 33.0 | 3.93e-01 | 100.0% | 89.0% |
| 1a3wA02 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.54 | 48.0 | 4.40e-01 | 93.6% | 94.0% |
| 3bwwA01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.54 | 43.0 | 3.91e-01 | 84.5% | 77.1% |
| 3c6cA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 43.0 | 3.69e-01 | 84.0% | 62.9% |
| 1ws6A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 40.0 | 4.16e-01 | 94.1% | 82.5% |
| 1mi3A00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.54 | 45.0 | 3.79e-01 | 89.8% | 64.3% |
| 1rvkA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.53 | 49.0 | 4.33e-01 | 98.9% | 81.8% |
| 4yo7A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 34.0 | 4.02e-01 | 81.3% | 93.1% |
| 3b8iC00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.52 | 47.0 | 4.15e-01 | 97.9% | 86.3% |
| 3eegB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 47.0 | 4.18e-01 | 100.0% | 96.7% |
| 1vcvA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 41.0 | 3.88e-01 | 84.0% | 75.2% |
| 4ydsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 3.76e-01 | 81.3% | 67.3% |
| 4kruA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 45.0 | 4.31e-01 | 94.1% | 86.4% |
| 2vk2A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 34.0 | 4.00e-01 | 81.3% | 96.9% |
| 1xrtA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 44.0 | 3.97e-01 | 93.6% | 83.7% |
| 1gcaA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 37.0 | 4.10e-01 | 81.3% | 94.6% |
| 3l49A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 33.0 | 3.91e-01 | 81.3% | 95.3% |
| 5ibqA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 34.0 | 3.93e-01 | 81.3% | 94.0% |
| 4nh0B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 46.0 | 3.91e-01 | 100.0% | 69.9% |
| 5cxpA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 46.0 | 4.01e-01 | 98.9% | 91.4% |
ECOD (72)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4010520 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.98 | 96.0 | 7.16e-01 | 100.0% | 75.7% |
| 5019626 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.98 | 96.0 | 7.08e-01 | 100.0% | 71.9% |
| 4248687 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.97 | 95.0 | 7.03e-01 | 100.0% | 72.2% |
| 5052299 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.97 | 95.0 | 7.21e-01 | 100.0% | 75.7% |
| 3942175 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.95 | 94.0 | 7.14e-01 | 100.0% | 76.4% |
| 998620 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.94 | 92.0 | 6.97e-01 | 100.0% | 74.0% |
| 5054137 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.90 | 87.0 | 6.56e-01 | 100.0% | 72.3% |
| 5037814 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.90 | 87.0 | 6.58e-01 | 100.0% | 74.3% |
| 4461868 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 86.0 | 6.54e-01 | 100.0% | 76.5% |
| 5013118 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.87 | 85.0 | 6.54e-01 | 100.0% | 75.1% |
| 2096142 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.87 | 84.0 | 6.51e-01 | 100.0% | 75.1% |
| 3603477 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.86 | 84.0 | 7.10e-01 | 100.0% | 90.0% |
| 5063550 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.86 | 83.0 | 6.40e-01 | 100.0% | 74.2% |
| 5014251 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.86 | 82.0 | 6.40e-01 | 100.0% | 74.4% |
| 4949910 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 82.0 | 6.29e-01 | 100.0% | 70.3% |
| 5054052 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.83 | 80.0 | 6.29e-01 | 100.0% | 75.7% |
| 4941152 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.83 | 79.0 | 6.23e-01 | 100.0% | 76.1% |
| 4280202 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.82 | 75.0 | 6.59e-01 | 94.7% | 98.8% |
| 5046504 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 78.0 | 6.24e-01 | 100.0% | 77.3% |
| 4939989 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 78.0 | 6.12e-01 | 100.0% | 75.4% |
| 4929847 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 77.0 | 6.20e-01 | 100.0% | 82.4% |
| 4955076 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 77.0 | 6.27e-01 | 100.0% | 79.4% |
| 4992503 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 78.0 | 6.17e-01 | 100.0% | 74.9% |
| 5012686 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.79 | 76.0 | 5.83e-01 | 100.0% | 72.8% |
| 5032526 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.79 | 76.0 | 6.09e-01 | 100.0% | 76.7% |
| 5059060 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.79 | 76.0 | 5.62e-01 | 100.0% | 84.8% |
| 5044430 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.78 | 73.0 | 6.38e-01 | 100.0% | 98.9% |
| 5059056 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.78 | 75.0 | 6.07e-01 | 100.0% | 81.2% |
| 4979879 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.77 | 62.0 | 5.34e-01 | 84.0% | 83.5% |
| 4874036 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 71.0 | 5.99e-01 | 97.3% | 86.7% |
| 4995727 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 64.0 | 5.72e-01 | 87.2% | 98.4% |
| 5058697 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 70.0 | 5.64e-01 | 100.0% | 81.8% |
| 4150872 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 57.0 | 5.14e-01 | 81.3% | 62.4% |
| 1349723 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.72 | 66.0 | 5.18e-01 | 98.9% | 74.5% |
| 5035238 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 56.0 | 4.97e-01 | 81.3% | 58.8% |
| 4549995 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.71 | 58.0 | 4.79e-01 | 84.0% | 81.3% |
| 4112382 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.71 | 64.0 | 5.15e-01 | 94.1% | 76.4% |
| 4342796 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.71 | 66.0 | 5.29e-01 | 100.0% | 84.5% |
| 3956953 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.70 | 55.0 | 4.82e-01 | 81.3% | 55.3% |
| 4192268 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.70 | 64.0 | 5.25e-01 | 95.7% | 78.4% |
| 4607381 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.70 | 63.0 | 5.10e-01 | 94.1% | 76.1% |
| 4095746 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.70 | 63.0 | 5.17e-01 | 95.7% | 77.5% |
| 4194365 | 7577.1.1.0 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases | 0.70 | 62.0 | 4.07e-01 | 94.1% | 33.9% |
| 4084861 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.70 | 63.0 | 5.17e-01 | 94.7% | 79.1% |
| 4927433 | 2002.1.1.443 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › BATS | 0.70 | 63.0 | 5.18e-01 | 95.7% | 77.5% |
| 4043477 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.69 | 63.0 | 5.01e-01 | 95.7% | 72.3% |
| 5079463 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.69 | 64.0 | 5.30e-01 | 99.5% | 90.2% |
| 4640072 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.69 | 62.0 | 5.10e-01 | 95.7% | 76.7% |
| 4961657 | 2002.1.1.443 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › BATS | 0.69 | 61.0 | 4.96e-01 | 94.1% | 76.2% |
| 4063088 | 2002.1.1.205 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,CofH_C | 0.69 | 64.0 | 5.04e-01 | 98.4% | 75.9% |
| 3190998 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.69 | 62.0 | 4.91e-01 | 95.7% | 69.9% |
| 4085830 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.68 | 63.0 | 5.04e-01 | 97.9% | 72.0% |
| 4564319 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.67 | 63.0 | 5.02e-01 | 100.0% | 85.1% |
| 5083520 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.67 | 41.0 | 5.06e-01 | 81.3% | 98.3% |
| 5031416 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.66 | 59.0 | 5.34e-01 | 94.7% | 82.0% |
| 5071291 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.65 | 59.0 | 5.05e-01 | 95.2% | 72.5% |
| 5053413 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.64 | 57.0 | 4.94e-01 | 93.0% | 86.2% |
| 3602637 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.64 | 43.0 | 4.13e-01 | 81.3% | 58.6% |
| 5063125 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.62 | 56.0 | 5.11e-01 | 94.7% | 75.0% |
| 4948473 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.59 | 34.0 | 4.16e-01 | 81.8% | 87.4% |
| 169414 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.55 | 50.0 | 4.29e-01 | 100.0% | 87.0% |
| 4960571 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.55 | 48.0 | 4.07e-01 | 93.6% | 86.2% |
| 3926373 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.55 | 48.0 | 4.19e-01 | 95.2% | 76.9% |
| 4385936 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.55 | 50.0 | 4.30e-01 | 99.5% | 97.3% |
| 4953342 | 2002.1.1.76 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC | 0.55 | 43.0 | 3.94e-01 | 84.0% | 63.7% |
| 5009357 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.54 | 49.0 | 3.88e-01 | 100.0% | 69.4% |
| 3233177 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.53 | 48.0 | 3.22e-01 | 100.0% | 51.2% |
| 5025499 | 2002.1.1.76 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC | 0.53 | 43.0 | 3.92e-01 | 85.0% | 94.6% |
| 2816094 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.52 | 46.0 | 3.48e-01 | 95.2% | 87.8% |
| 4957020 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.52 | 36.0 | 3.63e-01 | 71.7% | 100.0% |
| 3965266 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.51 | 44.0 | 3.83e-01 | 91.4% | 78.6% |
| 5063001 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.50 | 46.0 | 4.04e-01 | 100.0% | 75.0% |
D2
medium
residues 338-384
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1evyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.71 | 55.0 | 3.93e-01 | 87.2% | 36.3% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.70 | 54.0 | 5.48e-01 | 87.2% | 91.1% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.70 | 49.0 | 3.48e-01 | 78.7% | 22.8% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.67 | 49.0 | 3.39e-01 | 80.9% | 24.0% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.66 | 47.0 | 3.94e-01 | 80.9% | 44.4% |
| 1rr7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 50.0 | 5.07e-01 | 87.2% | 89.1% |
| 2nrkA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.55 | 43.0 | 3.14e-01 | 95.7% | 86.1% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 41.0 | 2.46e-01 | 76.6% | 35.5% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.54 | 36.0 | 3.68e-01 | 72.3% | 74.5% |
| 1wi9A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.36e-01 | 70.2% | 75.9% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.52 | 37.0 | 3.28e-01 | 85.1% | 82.9% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.46e-01 | 76.6% | 65.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4248687 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.96 | 76.0 | 4.30e-01 | 83.0% | 10.0% |
| 4379 | 3014.1.1.1 ↗ | alpha duplicates or obligate multimers › Middle operon regulator dimerization domain › Middle operon regulator dimerization domain › Middle operon regulator dimerization domain › Mor | 0.65 | 50.0 | 5.07e-01 | 87.2% | 89.1% |
| 4630575 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.64 | 48.0 | 3.69e-01 | 87.2% | 33.6% |
| 4318142 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.62 | 48.0 | 3.55e-01 | 87.2% | 31.4% |
| 3960640 | 6113.1.1.0 ↗ | alpha duplicates or obligate multimers › Dimerization element domain in modular polyketide synthases › Dimerization element domain in modular polyketide synthases › Dimerization element domain in modular polyketide synthases | 0.58 | 40.0 | 3.79e-01 | 76.6% | 58.3% |
| 4964114 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.57 | 46.0 | 3.20e-01 | 93.6% | 41.1% |
| 4878100 | 616.1.1.2 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › WHEP-TRS | 0.54 | 36.0 | 3.78e-01 | 70.2% | 81.0% |
| 3575095 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.53 | 36.0 | 3.34e-01 | 72.3% | 53.8% |
| 4935885 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.52 | 44.0 | 2.72e-01 | 97.9% | 76.1% |
| 3680789 | 2004.1.1.505 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_30 | 0.52 | 40.0 | 2.45e-01 | 100.0% | 91.2% |