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MK416013.1__QBQ71642.1__X__00001

Bact-Vir

MK416013.1__QBQ71642.1__X__00001

Identity

Accession:
MK416013 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_ST16-OXA48phi5.1

TaxID: 2510481

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-85
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06305.17 best LapA_dom 75.5 3.40e-21 91.3% 98.4%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.84 64.0 5.41e-01 100.0% 51.9%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 42.0 3.22e-01 76.8% 24.3%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.78 39.0 3.28e-01 79.7% 29.6%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.73 55.0 3.47e-01 79.7% 47.1%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 59.0 4.96e-01 92.8% 54.1%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.73 54.0 3.52e-01 78.3% 50.2%
2f1rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 27.0 2.05e-01 76.8% 16.2%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 59.0 4.70e-01 100.0% 74.4%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.60 51.0 4.15e-01 89.9% 68.6%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 40.0 3.05e-01 78.3% 33.3%
4xhpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 46.0 3.37e-01 88.4% 40.8%
1tedA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 32.0 2.47e-01 78.3% 26.2%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 33.0 2.20e-01 76.8% 15.3%
2h84A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 33.0 2.61e-01 82.6% 28.4%
4jaqA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 30.0 2.40e-01 78.3% 26.9%
3euoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 33.0 2.52e-01 82.6% 26.8%
5e0sB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.52 38.0 2.66e-01 75.4% 29.4%
3k8pC01 1.20.58.1440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 35.0 3.15e-01 71.0% 45.7%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 30.0 2.32e-01 78.3% 25.5%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025452 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.89 61.0 5.02e-01 85.5% 42.6%
3482328 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.89 60.0 5.10e-01 87.0% 45.7%
3579472 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.88 59.0 4.68e-01 87.0% 36.9%
4940192 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.87 60.0 4.94e-01 71.0% 43.0%
60305 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.85 56.0 4.80e-01 88.4% 44.3%
3594965 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.85 60.0 4.67e-01 88.4% 36.4%
1000517 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.84 64.0 5.51e-01 100.0% 54.5%
3550136 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.83 56.0 4.65e-01 88.4% 41.7%
3786162 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.82 57.0 5.05e-01 92.8% 52.6%
3614763 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.81 62.0 5.03e-01 100.0% 45.8%
3228583 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.81 61.0 4.98e-01 98.6% 47.0%
5028061 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.80 56.0 5.04e-01 92.8% 55.6%
3583094 109.4.1.75 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IFRD 0.80 37.0 2.73e-01 75.4% 19.4%
3493963 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.80 61.0 5.25e-01 97.1% 55.0%
4995140 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.78 55.0 4.28e-01 88.4% 35.2%
3932471 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.78 47.0 2.95e-01 88.4% 12.4%
5036014 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.77 55.0 4.88e-01 95.7% 53.7%
3283346 1087.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of Phi ETA orf 56-like protein › N-terminal domain of Phi ETA orf 56-like protein › N-terminal domain of Phi ETA orf 56-like protein › LapA_dom 0.77 52.0 5.41e-01 71.0% 75.4%
4993067 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.75 55.0 4.21e-01 78.3% 34.8%
3394225 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.74 67.0 5.59e-01 100.0% 66.1%
4007555 1075.4.1.2 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane_2 0.73 63.0 3.99e-01 97.1% 20.0%
3859550 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.73 66.0 5.44e-01 100.0% 63.3%
3586018 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.73 67.0 5.22e-01 100.0% 49.3%
4960340 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.72 51.0 3.56e-01 73.9% 28.1%
3202986 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 66.0 5.37e-01 100.0% 76.8%
4259368 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 65.0 5.37e-01 100.0% 68.3%
3171568 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.72 53.0 3.63e-01 78.3% 27.2%
3234976 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 62.0 5.34e-01 97.1% 67.3%
3406351 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.71 67.0 5.59e-01 100.0% 62.7%
5029669 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.71 66.0 5.38e-01 100.0% 62.5%
5029389 601.17.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Group V grass pollen allergen › Group V grass pollen allergen 0.71 52.0 4.03e-01 76.8% 75.2%
4381440 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.71 66.0 5.46e-01 100.0% 66.1%
4271212 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.71 67.0 5.35e-01 100.0% 84.6%
4666900 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 64.0 5.19e-01 100.0% 76.8%
5036589 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 66.0 5.14e-01 100.0% 74.1%
4112182 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 66.0 5.36e-01 100.0% 64.4%
4224821 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 66.0 5.40e-01 100.0% 66.1%
4457710 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 65.0 5.31e-01 100.0% 64.2%
4681355 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 65.0 5.28e-01 100.0% 63.3%
3628456 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 64.0 5.05e-01 97.1% 59.4%
3718200 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.69 64.0 5.18e-01 100.0% 65.6%
4458171 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 64.0 5.05e-01 98.6% 74.6%
5078448 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 65.0 5.41e-01 100.0% 69.1%
3637098 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 63.0 4.93e-01 97.1% 55.6%
4973468 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 64.0 4.96e-01 100.0% 71.4%
3690513 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 64.0 5.05e-01 100.0% 57.1%
5035493 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 62.0 5.28e-01 95.7% 69.5%
3675304 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 64.0 5.21e-01 100.0% 63.3%
4981980 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 63.0 5.25e-01 100.0% 67.0%
3828336 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.68 63.0 5.27e-01 100.0% 66.7%
3265214 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.68 63.0 5.25e-01 100.0% 66.1%
4181293 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.68 63.0 5.33e-01 100.0% 69.1%
3808578 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.68 48.0 4.72e-01 73.9% 68.9%
3415741 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 62.0 4.76e-01 100.0% 46.9%
3787269 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.68 62.0 5.17e-01 97.1% 67.3%
3485296 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.68 59.0 5.13e-01 95.7% 62.9%
4971920 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 59.0 4.74e-01 92.8% 76.0%
3684015 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.68 54.0 4.70e-01 91.3% 58.0%
4995244 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 62.0 5.19e-01 100.0% 68.2%
4977598 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 60.0 5.10e-01 98.6% 68.2%
3270487 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 61.0 5.14e-01 100.0% 70.0%
3214720 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 56.0 4.95e-01 97.1% 65.3%
3712081 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 57.0 4.79e-01 92.8% 64.5%
3413217 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 58.0 4.93e-01 100.0% 60.0%
4017372 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 56.0 4.74e-01 97.1% 58.3%
5041715 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.63 58.0 4.92e-01 100.0% 70.9%
3593339 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.63 54.0 4.56e-01 95.7% 57.4%
5074454 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 57.0 4.61e-01 98.6% 70.8%
4939406 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 53.0 3.84e-01 100.0% 68.0%
4434185 3804.1.1.1 ↗ alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › Cas13a_endoribonuclease 0.54 43.0 3.20e-01 85.5% 52.7%
4665476 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.52 40.0 2.71e-01 79.7% 48.8%