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MK416013.1__QBQ71650.1__X__00009
Bact-VirMK416013.1__QBQ71650.1__X__00009
Identity
- Accession:
- MK416013 ↗
- Kingdom:
- phage
Quality
88.9
mean pLDDT
Taxonomy
TaxID: 2510481
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 41-184
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oyoA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.88 | 63.0 | 6.78e-01 | 72.9% | 91.2% |
| 2prrA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.86 | 60.0 | 6.47e-01 | 71.5% | 89.0% |
| 2gmyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.77 | 72.0 | 7.18e-01 | 97.2% | 96.6% |
| 1gu9C00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.75 | 69.0 | 6.48e-01 | 96.5% | 98.2% |
| 4g9qA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.73 | 64.0 | 5.29e-01 | 92.4% | 89.1% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 32.0 | 3.72e-01 | 95.8% | 64.4% |
| 3beyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.64 | 39.0 | 4.71e-01 | 70.1% | 92.6% |
| 2ouwB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 39.0 | 4.07e-01 | 75.0% | 74.3% |
| 4o6yB00 | 1.20.120.1770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 45.0 | 4.01e-01 | 93.8% | 100.0% |
| 1jmoA01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.52 | 39.0 | 3.40e-01 | 77.8% | 84.6% |
| 4ce7B00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 42.0 | 3.27e-01 | 88.9% | 99.1% |
| 3pivA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 39.0 | 3.89e-01 | 97.9% | 73.7% |
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 30.0 | 3.05e-01 | 70.1% | 56.6% |
| 1l8qA03 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.52 | 32.0 | 3.62e-01 | 80.6% | 82.2% |
| 1fx8A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.52 | 37.0 | 3.02e-01 | 73.6% | 41.3% |
| 4pdyA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 45.0 | 3.91e-01 | 100.0% | 66.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976376 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.99 | 97.0 | 7.26e-01 | 100.0% | 48.0% |
| 3983938 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.98 | 95.0 | 8.80e-01 | 98.6% | 83.5% |
| 3945481 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.88 | 82.0 | 8.02e-01 | 100.0% | 90.3% |
| 3232 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.82 | 77.0 | 6.96e-01 | 97.2% | 93.0% |
| 5040056 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.82 | 78.0 | 7.12e-01 | 98.6% | 80.6% |
| 3278427 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.81 | 75.0 | 6.82e-01 | 97.2% | 90.3% |
| 3945482 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.80 | 75.0 | 6.56e-01 | 98.6% | 87.2% |
| 3233 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.80 | 75.0 | 6.68e-01 | 97.9% | 91.6% |
| 4676175 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.79 | 72.0 | 7.35e-01 | 95.8% | 97.9% |
| 3942592 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.78 | 72.0 | 7.39e-01 | 96.5% | 100.0% |
| 3944754 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.78 | 73.0 | 6.70e-01 | 98.6% | 79.2% |
| 4032822 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.78 | 72.0 | 7.31e-01 | 97.9% | 99.3% |
| 3962789 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.78 | 71.0 | 6.69e-01 | 98.6% | 81.8% |
| 3715208 | 608.1.1.2 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › PA26 | 0.76 | 72.0 | 6.78e-01 | 100.0% | 85.9% |
| 3949242 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.74 | 69.0 | 6.18e-01 | 98.6% | 73.7% |
| 4272840 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.73 | 69.0 | 6.28e-01 | 100.0% | 94.6% |
| 3955920 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.70 | 52.0 | 5.91e-01 | 86.1% | 100.0% |
| 4975143 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.68 | 56.0 | 5.83e-01 | 95.1% | 91.9% |
| 3862625 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.63 | 33.0 | 3.39e-01 | 97.2% | 52.1% |
| 3328324 | 611.8.1.1 ↗ | alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › Ariadne | 0.59 | 36.0 | 3.31e-01 | 100.0% | 47.0% |
| 3542784 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.55 | 40.0 | 3.49e-01 | 76.4% | 83.1% |
| 5002309 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.52 | 36.0 | 3.43e-01 | 93.1% | 57.7% |
| 4992531 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.52 | 29.0 | 3.14e-01 | 92.4% | 62.5% |
| 3282940 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 40.0 | 3.07e-01 | 85.4% | 68.0% |
| 3282251 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.50 | 26.0 | 2.74e-01 | 96.5% | 51.2% |
D2
high
residues 202-383
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gmyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.80 | 62.0 | 6.93e-01 | 94.0% | 100.0% |
| 3lvyE01 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.76 | 64.0 | 6.73e-01 | 87.9% | 99.4% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.56 | 25.0 | 2.98e-01 | 78.6% | 57.9% |
| 2wocA00 | 1.10.4080.10 | Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 | 0.53 | 41.0 | 3.54e-01 | 81.9% | 78.7% |
| 1qdbA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 25.0 | 2.76e-01 | 96.2% | 55.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4009321 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.94 | 88.0 | 8.85e-01 | 99.5% | 96.7% |
| 3945482 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.84 | 80.0 | 7.72e-01 | 100.0% | 99.0% |
| 5040056 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.83 | 75.0 | 7.59e-01 | 94.0% | 100.0% |
| 3279123 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.81 | 71.0 | 7.28e-01 | 93.4% | 94.9% |
| 3232 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.79 | 72.0 | 7.17e-01 | 95.1% | 96.2% |
| 3956659 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.79 | 69.0 | 7.03e-01 | 92.3% | 96.7% |
| 3233 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.78 | 71.0 | 7.03e-01 | 95.1% | 94.2% |
| 3944754 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.77 | 69.0 | 7.01e-01 | 94.0% | 98.9% |
| 3945481 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.77 | 58.0 | 6.29e-01 | 94.5% | 91.0% |
| 3962789 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.77 | 66.0 | 6.86e-01 | 90.7% | 99.4% |
| 3715208 | 608.1.1.2 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › PA26 | 0.73 | 63.0 | 6.56e-01 | 90.7% | 100.0% |
| 3278427 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.71 | 63.0 | 6.35e-01 | 93.4% | 92.4% |
| 3983938 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.71 | 56.0 | 5.81e-01 | 94.5% | 86.5% |
| 3976376 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.68 | 61.0 | 5.04e-01 | 99.5% | 56.3% |
| 4975143 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.68 | 48.0 | 5.50e-01 | 93.4% | 97.0% |
| 3473587 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 27.0 | 3.20e-01 | 80.2% | 72.0% |