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MK416013.1__QBQ71686.1__X__00045

Bact-Vir

MK416013.1__QBQ71686.1__X__00045

Identity

Accession:
MK416013 ↗
Kingdom:
phage

Quality

84.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_ST16-OXA48phi5.1

TaxID: 2510481

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-105
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u07B00 3.30.2420.10 Alpha Beta › 2-Layer Sandwich › TolA/TonB C-terminal domain › TonB 0.93 87.0 7.92e-01 100.0% 83.0%
2k9kA00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.82 74.0 6.36e-01 100.0% 77.4%
1lr0A00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.79 72.0 5.82e-01 100.0% 65.1%
4g7xB00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.77 70.0 6.13e-01 100.0% 78.4%
1s62A00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.69 61.0 5.40e-01 100.0% 76.5%
3qp1A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.64 47.0 3.54e-01 79.7% 59.0%
2m2kA00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.63 55.0 4.51e-01 100.0% 63.4%
4clcA00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.63 45.0 3.47e-01 78.3% 57.4%
2a2lC00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.63 45.0 3.58e-01 76.8% 66.4%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.61 52.0 4.10e-01 100.0% 82.9%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.61 46.0 3.46e-01 79.7% 60.1%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.61 38.0 2.84e-01 100.0% 25.6%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 43.0 3.54e-01 76.8% 94.8%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 43.0 3.65e-01 76.8% 59.2%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 42.0 3.67e-01 72.5% 100.0%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 43.0 3.51e-01 76.8% 60.7%
5troA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 42.0 2.73e-01 73.9% 87.6%
6bwsB00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.59 43.0 3.45e-01 78.3% 67.9%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 43.0 3.28e-01 79.7% 59.8%
3cueC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 41.0 3.32e-01 76.8% 99.3%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 42.0 3.54e-01 78.3% 67.2%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 41.0 3.50e-01 78.3% 64.7%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.40e-01 78.3% 53.3%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 39.0 3.12e-01 76.8% 55.5%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 37.0 3.45e-01 72.5% 81.1%
2vfkA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.53 44.0 3.33e-01 100.0% 63.4%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 35.0 3.65e-01 75.4% 75.8%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.32e-01 78.3% 71.4%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.52e-01 84.1% 95.2%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.42e-01 75.4% 85.6%
7sqxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.26e-01 73.9% 85.7%
3hqiA01 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.52 38.0 3.18e-01 81.2% 96.4%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.33e-01 79.7% 93.6%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.52 30.0 2.45e-01 91.3% 27.3%
2je8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.28e-01 78.3% 87.3%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.51 37.0 2.88e-01 79.7% 57.3%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.19e-01 82.6% 48.6%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970711 272.1.1.0 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.94 90.0 8.12e-01 100.0% 88.6%
4549660 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.93 87.0 8.24e-01 100.0% 100.0%
3964903 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.91 85.0 8.28e-01 100.0% 96.0%
4324302 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.90 81.0 7.68e-01 95.7% 94.9%
2391752 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.90 83.0 7.28e-01 100.0% 78.8%
2899924 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.88 81.0 7.42e-01 100.0% 83.9%
4289847 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.88 81.0 7.18e-01 100.0% 86.3%
3839673 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.87 80.0 6.74e-01 100.0% 70.0%
4096220 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.87 80.0 7.13e-01 100.0% 82.1%
4628638 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.87 79.0 7.20e-01 100.0% 85.6%
3385499 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.86 79.0 7.03e-01 100.0% 87.4%
3972969 272.1.1.0 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.83 75.0 6.73e-01 100.0% 88.4%
4338610 272.1.1.0 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.82 75.0 7.14e-01 100.0% 91.1%
3974767 272.1.1.0 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.80 73.0 6.48e-01 100.0% 86.3%
3166161 272.1.1.2 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA 0.77 70.0 6.47e-01 98.6% 88.2%
3787551 223.2.1.17 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SLM4 0.77 52.0 3.90e-01 71.0% 59.4%
3942685 272.1.1.2 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA 0.73 64.0 5.52e-01 97.1% 69.5%
1161117 272.1.1.2 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA 0.71 63.0 5.74e-01 100.0% 80.6%
3970590 272.1.1.0 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.70 60.0 5.17e-01 97.1% 79.1%
3968588 272.1.1.3 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.69 62.0 5.80e-01 100.0% 88.2%
3840130 272.1.1.3 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.69 61.0 5.71e-01 100.0% 85.9%
4944314 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 51.0 4.17e-01 78.3% 64.0%
3600107 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.68 48.0 3.26e-01 75.4% 29.0%
3389932 223.1.1.29 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.68 49.0 3.90e-01 76.8% 86.2%
3386099 272.1.1.3 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.67 57.0 5.36e-01 97.1% 85.9%
1393818 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.66 57.0 5.06e-01 100.0% 83.3%
3974768 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 46.0 3.57e-01 76.8% 66.5%
3240178 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.63 46.0 3.69e-01 78.3% 97.9%
4972247 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 45.0 3.69e-01 78.3% 60.8%
3639060 223.1.1.106 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF7891 0.61 44.0 3.96e-01 75.4% 98.9%
4380266 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 45.0 3.16e-01 79.7% 40.0%
4943133 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 44.0 3.66e-01 78.3% 62.3%
1487355 11.1.1.358 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EEP_ig-like 0.60 44.0 3.76e-01 79.7% 49.5%
5072140 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 43.0 3.56e-01 78.3% 62.8%
4994595 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 42.0 3.45e-01 76.8% 62.2%
4579401 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.59 51.0 4.13e-01 100.0% 77.1%
5052370 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 41.0 3.49e-01 72.5% 70.9%
4947581 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 41.0 3.55e-01 75.4% 64.5%
3491036 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.58 40.0 3.69e-01 72.5% 80.9%
4330210 327.6.1.6 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Secretin 0.57 42.0 2.88e-01 84.1% 20.7%
3605972 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 41.0 3.63e-01 79.7% 69.1%
5049481 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 3.22e-01 72.5% 70.7%
4946344 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 3.20e-01 76.8% 55.2%
4950075 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.55 39.0 3.39e-01 76.8% 69.6%
3929673 859.1.1.0 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.55 40.0 3.06e-01 76.8% 58.2%
4971324 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.55 40.0 3.68e-01 78.3% 85.6%
4030365 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.55 41.0 3.59e-01 81.2% 73.3%
4959959 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 38.0 3.37e-01 76.8% 51.0%
3970362 10.12.1.128 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF6016 0.54 34.0 2.63e-01 75.4% 29.3%
3221343 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.44e-01 92.8% 74.2%
4011483 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.28e-01 78.3% 54.8%
3065880 3019.1.1.4 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › GbpA_2 0.52 38.0 3.26e-01 76.8% 81.3%
5041351 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 37.0 3.15e-01 76.8% 85.8%
4927140 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.43e-01 78.3% 97.9%
3742573 11.1.5.34 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › LAG1-DNAbind 0.52 38.0 3.04e-01 78.3% 43.0%
3783226 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.20e-01 76.8% 50.9%
3486031 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 36.0 3.17e-01 78.3% 82.5%
5063417 11.1.1.236 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.51 36.0 3.26e-01 75.4% 54.7%
5040390 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.18e-01 84.1% 92.3%
5056337 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.38e-01 84.1% 92.4%
3909337 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 36.0 3.17e-01 81.2% 85.8%
3687767 4121.1.1.7 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 0.50 37.0 2.34e-01 81.2% 39.5%