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MK416013.1__QBQ71703.1__X__00062

Bact-Vir

MK416013.1__QBQ71703.1__X__00062

Identity

Accession:
MK416013 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_ST16-OXA48phi5.1

TaxID: 2510481

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-34_48-78
PDB
Domain cluster: rep: FO818745.1__CDN90763.1__EC725RCS47_p0021__00023__D4-79
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 49.0 3.89e-01 95.3% 62.3%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 49.0 3.89e-01 93.8% 69.9%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 50.0 4.22e-01 100.0% 81.2%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 48.0 3.56e-01 96.9% 88.3%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 46.0 4.06e-01 100.0% 83.5%
1p97A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 46.0 3.95e-01 100.0% 80.7%
4ehoA04 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 46.0 3.89e-01 100.0% 72.6%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 38.0 3.38e-01 75.0% 78.0%
3eehA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 47.0 3.95e-01 100.0% 81.0%
6pxyA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 45.0 3.76e-01 93.8% 75.2%
3pxpA02 3.30.450.180 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 45.0 3.29e-01 96.9% 80.4%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 45.0 3.72e-01 100.0% 72.3%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 45.0 4.04e-01 100.0% 69.7%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 47.0 3.47e-01 100.0% 50.6%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 45.0 3.91e-01 100.0% 83.2%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.53 37.0 2.21e-01 75.0% 9.2%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 3.61e-01 95.3% 84.0%
6pzjA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 41.0 3.37e-01 98.4% 71.6%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 42.0 3.67e-01 98.4% 67.9%
1z4vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 43.0 2.67e-01 100.0% 16.7%
4ku0D00 2.60.200.60 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 41.0 3.74e-01 98.4% 79.2%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.46e-01 100.0% 85.3%
4zohB03 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.51 36.0 3.21e-01 78.1% 98.0%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.51 34.0 3.02e-01 85.9% 45.5%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 43.0 3.38e-01 96.9% 51.1%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3689179 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 44.0 2.91e-01 70.3% 84.4%
3204747 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 54.0 3.57e-01 100.0% 83.2%
4980669 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 52.0 4.25e-01 100.0% 70.8%
4980668 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 50.0 3.33e-01 100.0% 30.7%
4962862 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.59 49.0 4.12e-01 100.0% 73.6%
4959633 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.59 50.0 3.42e-01 100.0% 34.9%
3722822 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 40.0 2.45e-01 71.9% 53.8%
5047587 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.58 49.0 4.08e-01 100.0% 72.8%
5082808 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.58 49.0 2.73e-01 100.0% 10.5%
4989531 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.58 49.0 4.27e-01 100.0% 82.9%
3649430 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 50.0 4.17e-01 98.4% 97.4%
3226662 7502.1.1.2 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.58 41.0 2.82e-01 75.0% 34.8%
4959372 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.58 51.0 4.08e-01 100.0% 70.8%
4996179 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 48.0 2.93e-01 100.0% 19.0%
3280801 223.1.1.36 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MLTR_LBD 0.57 49.0 3.67e-01 100.0% 74.9%
4968254 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 49.0 4.08e-01 100.0% 76.7%
4939729 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.57 48.0 3.99e-01 100.0% 73.6%
4231610 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.57 48.0 3.77e-01 100.0% 71.0%
4975335 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 48.0 4.15e-01 100.0% 81.8%
5044945 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.57 49.0 4.02e-01 100.0% 74.4%
5061315 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.57 48.0 3.17e-01 100.0% 29.0%
3387810 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.57 46.0 3.18e-01 93.8% 38.4%
4960093 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.57 48.0 3.97e-01 100.0% 72.0%
4977586 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 48.0 3.10e-01 100.0% 27.0%
5004858 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.56 48.0 3.77e-01 100.0% 63.3%
3631147 247.1.1.10 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL,Lactamase_B_2 0.56 46.0 3.12e-01 93.8% 39.6%
4979995 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 47.0 3.31e-01 100.0% 37.9%
4940001 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.56 46.0 4.15e-01 100.0% 89.0%
3281357 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 47.0 3.74e-01 100.0% 49.7%
4945264 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 46.0 4.00e-01 100.0% 81.8%
4984595 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.55 46.0 3.22e-01 100.0% 35.6%
4957168 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.55 46.0 3.94e-01 100.0% 79.1%
4962732 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 46.0 3.89e-01 100.0% 75.0%
4957949 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.55 46.0 3.77e-01 100.0% 67.4%
4958153 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.55 46.0 3.83e-01 100.0% 72.8%
5048407 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.55 46.0 3.78e-01 100.0% 72.3%
5083224 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 46.0 4.00e-01 100.0% 85.7%
4960019 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 46.0 3.92e-01 100.0% 61.7%
4996177 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 45.0 3.77e-01 100.0% 72.8%
4238796 10.1.1.15 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_12 0.54 40.0 2.77e-01 100.0% 22.2%
5004659 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 44.0 3.86e-01 100.0% 80.0%
5044350 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 45.0 3.67e-01 100.0% 69.6%
5046055 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 45.0 3.77e-01 100.0% 80.0%
4988027 223.1.1.6 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.53 44.0 2.97e-01 100.0% 39.0%
4939999 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 45.0 3.88e-01 100.0% 83.6%
4929294 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 36.0 2.70e-01 71.9% 69.4%
4997160 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 44.0 3.95e-01 100.0% 90.0%
3849805 3398.1.1.1 ↗ a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › TMEM173 0.53 43.0 3.05e-01 90.6% 46.2%
4975336 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 43.0 3.40e-01 100.0% 56.9%
1563144 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.52 43.0 2.64e-01 100.0% 15.0%
3585914 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 41.0 3.03e-01 95.3% 61.4%
1681363 3398.1.1.1 ↗ a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › TMEM173 0.51 39.0 2.98e-01 90.6% 54.5%
3317821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 4.00e-01 93.8% 85.3%
3968741 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 42.0 3.29e-01 100.0% 58.1%
4023252 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 41.0 3.43e-01 100.0% 67.7%