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MK416017.1__QBQ71638.1__X__00058
Bact-VirMK416017.1__QBQ71638.1__X__00058
Identity
- Accession:
- MK416017 ↗
- Kingdom:
- phage
Quality
88.7
mean pLDDT
Taxonomy
TaxID: 2510475
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-37_89-233
Domain cluster:
rep: NC_048757.1__YP_009844891.1__HWC13_gp082__00082__D259-407
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03734.20 best | YkuD | 77.0 | 3.30e-21 | 85.5% | 98.0% |
D2
high
residues 237-303
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17969.7 best | Ldt_C | 81.9 | 5.90e-23 | 100.0% | 97.0% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gcyA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 34.0 | 3.63e-01 | 100.0% | 80.4% |
| 5e75A00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 41.0 | 2.51e-01 | 91.0% | 46.8% |
| 3pfsB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 43.0 | 3.51e-01 | 94.0% | 85.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976257 | 3743.1.1.1 ↗ | a+b two layers › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain › Ldt_C | 0.89 | 77.0 | 7.94e-01 | 94.0% | 96.8% |
| 4008500 | 3743.1.1.1 ↗ | a+b two layers › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain › Ldt_C | 0.89 | 80.0 | 8.16e-01 | 98.5% | 98.5% |
| 3981189 | 3743.1.1.0 ↗ | a+b two layers › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain | 0.89 | 83.0 | 5.54e-01 | 100.0% | 29.8% |
| 1097266 | 3743.1.1.1 ↗ | a+b two layers › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain › Ldt_C | 0.79 | 73.0 | 7.22e-01 | 100.0% | 95.7% |
| 3971664 | 3743.1.1.0 ↗ | a+b two layers › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain | 0.68 | 60.0 | 6.08e-01 | 97.0% | 100.0% |