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MK422448.1__QBQ71831.1__X__00014

Bact-Vir

MK422448.1__QBQ71831.1__X__00014

Identity

Accession:
MK422448 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_ST512-KPC3phi13.3

TaxID: 2510471

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-201
PDB
Domain cluster: rep: LSDeep1_scaffold_41_prodigal-single.1__X__X__00511__D278-386_572-664
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00117.35 best GATase 165.5 1.60e-48 99.0% 99.5%
PF07722.20 Peptidase_C26 40.3 4.40e-10 59.1% 54.3%
D2 high residues 210-399
PDB
Domain cluster: rep: IMGVR_UViG_3300000928_002594-3300000928-OpTDRAFT_100169606__D4-180
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02540.24 best NAD_synthase 31.7 1.20e-07 51.0% 19.0%
PF03054.23 tRNA_Me_trans 25.1 1.80e-05 26.3% 16.3%
D3 high residues 415-512
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00407__D37-108
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00958.28 best GMP_synt_C 120.9 2.70e-35 81.6% 87.0%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gpmA03 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.94 89.0 8.60e-01 98.0% 88.9%
1egaA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.70 61.0 5.93e-01 96.9% 85.8%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.68 52.0 5.39e-01 92.9% 86.8%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.66 51.0 5.07e-01 92.9% 80.0%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.64 57.0 5.16e-01 100.0% 72.0%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.64 59.0 5.24e-01 100.0% 74.5%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.63 55.0 5.60e-01 100.0% 98.9%
1vw5A00 3.30.70.1420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1 0.63 57.0 4.92e-01 100.0% 78.1%
1nyeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.63 56.0 4.93e-01 100.0% 67.1%
4oycB00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.63 48.0 5.00e-01 99.0% 91.0%
2bjoA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.61 53.0 5.48e-01 100.0% 98.9%
4l4qA03 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.61 53.0 4.93e-01 95.9% 83.2%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.61 56.0 4.93e-01 100.0% 70.7%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.23e-01 91.8% 71.6%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.60 53.0 4.62e-01 100.0% 71.9%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.58 52.0 4.70e-01 100.0% 79.1%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 43.0 4.19e-01 91.8% 71.0%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 4.11e-01 92.9% 73.3%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 51.0 4.99e-01 99.0% 94.4%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 37.0 4.22e-01 84.7% 95.8%
2x7bA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 42.0 3.65e-01 93.9% 53.2%
4lg3A01 3.10.310.90 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.52 38.0 3.48e-01 81.6% 56.7%
1k8iA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.51 31.0 3.42e-01 86.7% 76.6%
5xgbA03 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 37.0 2.82e-01 76.5% 36.9%
4e0aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 37.0 3.26e-01 93.9% 49.4%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943111 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 1.00 98.0 9.11e-01 100.0% 85.2%
4975902 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 1.00 98.0 9.49e-01 100.0% 93.3%
4608473 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.99 97.0 8.32e-01 100.0% 82.9%
4903241 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.97 78.0 7.84e-01 81.6% 82.5%
4597720 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.96 90.0 8.22e-01 100.0% 78.3%
4378739 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.96 89.0 6.93e-01 100.0% 50.8%
5029641 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.96 85.0 6.47e-01 100.0% 45.0%
4260261 2005.1.1.111 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › GMP_synt_C 0.96 88.0 6.72e-01 100.0% 47.7%
3248034 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.89 84.0 6.26e-01 100.0% 45.1%
4947403 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.88 75.0 6.20e-01 100.0% 54.7%
3595866 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.88 83.0 6.04e-01 100.0% 41.7%
3211449 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.87 83.0 5.78e-01 100.0% 93.8%
3615706 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.86 83.0 5.13e-01 100.0% 47.2%
None — 0.86 83.0 5.09e-01 100.0% 48.8%
3712550 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.86 82.0 5.12e-01 100.0% 47.6%
3558070 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.86 83.0 5.08e-01 100.0% 48.5%
3507049 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.85 73.0 7.26e-01 88.8% 93.0%
3993561 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.85 81.0 6.05e-01 100.0% 52.8%
5031069 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.85 81.0 6.24e-01 100.0% 91.8%
3475239 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.85 81.0 5.71e-01 100.0% 90.3%
5043313 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.84 64.0 5.47e-01 100.0% 52.0%
5051459 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.84 81.0 6.58e-01 100.0% 89.1%
5073068 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.83 79.0 6.02e-01 100.0% 89.5%
4416332 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.82 79.0 6.31e-01 100.0% 90.6%
4986442 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.82 78.0 5.95e-01 100.0% 91.0%
5077883 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.81 59.0 6.38e-01 81.6% 87.1%
5061441 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.80 77.0 5.99e-01 100.0% 93.5%
5037879 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.79 75.0 5.83e-01 100.0% 92.6%
4971372 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.78 74.0 6.07e-01 100.0% 89.7%
3507051 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.74 66.0 6.22e-01 94.9% 92.2%
4972532 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.69 54.0 5.63e-01 92.9% 91.1%
5882 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.67 62.0 5.41e-01 100.0% 68.1%
4954522 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.67 53.0 5.48e-01 91.8% 89.4%
3969252 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.66 53.0 4.77e-01 94.9% 63.0%
5024508 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.65 60.0 5.12e-01 100.0% 63.9%
5061294 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.65 61.0 5.39e-01 100.0% 77.0%
4948501 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.65 57.0 5.28e-01 99.0% 75.0%
3712216 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.65 54.0 5.68e-01 99.0% 97.8%
4145589 327.13.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system 0.65 54.0 5.31e-01 99.0% 83.8%
4033990 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.64 59.0 5.06e-01 100.0% 74.3%
3964178 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.63 58.0 5.20e-01 100.0% 72.6%
4138757 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.63 58.0 5.11e-01 100.0% 78.6%
4967170 3261.1.1.0 ↗ a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.63 51.0 5.35e-01 100.0% 96.6%
4228205 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.63 58.0 5.11e-01 100.0% 70.0%
4034614 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.62 57.0 5.05e-01 100.0% 72.1%
4053920 327.13.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF 0.62 51.0 4.76e-01 99.0% 72.5%
3262316 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.62 57.0 4.83e-01 100.0% 63.9%
5047206 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.62 56.0 4.85e-01 100.0% 71.3%
4045121 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.62 44.0 4.82e-01 96.9% 92.5%
5058661 304.55.1.14 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.61 53.0 4.84e-01 94.9% 90.8%
3291219 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.61 55.0 4.80e-01 100.0% 66.7%
324414 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.61 56.0 4.93e-01 100.0% 70.2%
3974303 4081.1.1.16 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › T6SS_TssF 0.61 52.0 4.79e-01 93.9% 80.8%
5876 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.60 54.0 4.63e-01 100.0% 71.6%
4968507 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.59 53.0 4.74e-01 100.0% 72.1%
3932877 327.17.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_M 0.59 52.0 4.93e-01 98.0% 82.6%
4933810 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.59 53.0 4.63e-01 100.0% 73.1%
3981315 327.7.1.16 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › T6SS_TssF 0.58 50.0 4.35e-01 94.9% 66.5%
5044368 327.17.1.9 ↗ a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › OsmC 0.58 52.0 4.63e-01 100.0% 77.9%
4963974 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 50.0 3.44e-01 94.9% 28.7%
3597648 327.17.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase 0.58 51.0 4.77e-01 98.0% 82.5%
4263042 327.17.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_M 0.57 50.0 4.64e-01 98.0% 88.0%
4386717 327.13.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF 0.56 50.0 4.80e-01 99.0% 88.7%
4990821 7571.1.1.1 ↗ a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.55 46.0 3.40e-01 92.9% 97.1%
4010862 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.55 48.0 4.57e-01 100.0% 80.9%
4876397 327.17.1.8 ↗ a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_M, S-AdoMet_synt_C 0.55 48.0 4.45e-01 98.0% 74.4%
5075107 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.55 46.0 4.16e-01 93.9% 68.6%
5074340 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.55 46.0 4.15e-01 93.9% 71.4%
5061358 304.55.1.14 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.54 44.0 4.27e-01 90.8% 98.2%
3413287 11.1.1.796 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Shg 0.53 44.0 3.88e-01 95.9% 59.4%
4944561 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.53 40.0 4.04e-01 95.9% 79.0%