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MK422448.1__QBQ71869.1__X__00052

Bact-Vir

MK422448.1__QBQ71869.1__X__00052

Identity

Accession:
MK422448 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_ST512-KPC3phi13.3

TaxID: 2510471

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-35
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eupA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.63 45.0 2.58e-01 81.8% 14.1%
3mdmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 39.0 2.24e-01 78.8% 14.5%
1xhsA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.52 41.0 3.00e-01 100.0% 77.9%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.52 39.0 3.64e-01 90.9% 95.7%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4048813 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.78 64.0 5.58e-01 100.0% 72.7%
3714926 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.78 63.0 5.69e-01 100.0% 76.0%
3705484 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.77 63.0 5.50e-01 100.0% 69.1%
3606398 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.77 63.0 5.49e-01 100.0% 69.1%
3600188 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.72 58.0 5.10e-01 100.0% 69.1%
3593797 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.70 55.0 4.90e-01 100.0% 69.1%
4990371 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.66 48.0 3.88e-01 78.8% 94.3%
D2 medium residues 49-90
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ld7A00 6.10.160.20 Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.76 60.0 4.63e-01 90.5% 39.4%
2qbyA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 59.0 3.98e-01 92.9% 22.5%
7z67A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 49.0 3.07e-01 71.4% 87.2%
2zb9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 51.0 4.81e-01 76.2% 64.0%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.71 59.0 4.20e-01 95.2% 31.0%
6g6kC00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.71 58.0 4.69e-01 100.0% 46.6%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.70 59.0 4.71e-01 100.0% 71.9%
2pg0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.66 53.0 3.79e-01 100.0% 63.8%
3b0bC02 6.10.130.30 Special › Helix non-globular › GTP Cyclohydrolase I; Chain A, domain 1 › 0.65 46.0 4.63e-01 76.2% 81.4%
2lfhA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.65 54.0 4.72e-01 100.0% 63.2%
3cl3A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.63 48.0 3.97e-01 92.9% 45.2%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.61 49.0 4.07e-01 97.6% 71.4%
7x0fB01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.60 49.0 4.09e-01 90.5% 52.1%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 50.0 4.39e-01 97.6% 70.8%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.59 43.0 2.55e-01 78.6% 11.0%
3rkgA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.58 49.0 3.35e-01 100.0% 69.5%
1is9A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.57 45.0 2.70e-01 95.2% 27.4%
4wv4B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.57 48.0 3.81e-01 100.0% 89.2%
6y6hA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 43.0 3.00e-01 97.6% 42.5%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 37.0 3.31e-01 71.4% 61.3%
4k35A04 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.53 43.0 4.15e-01 92.9% 92.0%
2wzvA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.53 44.0 2.79e-01 95.2% 37.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4964450 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.90 76.0 4.90e-01 92.9% 22.3%
3525185 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.86 76.0 5.28e-01 100.0% 32.3%
3368018 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 69.0 5.79e-01 90.5% 54.3%
3843093 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.84 74.0 5.97e-01 100.0% 52.5%
3750976 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.84 73.0 4.76e-01 100.0% 23.3%
3268404 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.82 67.0 5.93e-01 90.5% 63.3%
3759310 105.1.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.82 71.0 5.28e-01 100.0% 40.0%
3392993 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.81 62.0 5.87e-01 83.3% 70.0%
3598953 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.76 65.0 3.73e-01 100.0% 17.0%
4974358 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.73 58.0 4.48e-01 95.2% 38.1%
4975876 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.73 63.0 3.68e-01 100.0% 17.3%
5024245 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.72 45.0 3.31e-01 90.5% 24.5%
4209 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.71 63.0 3.64e-01 100.0% 33.6%
1148165 3859.1.1.1 ↗ alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › DUF3806 0.71 59.0 4.17e-01 95.2% 30.1%
4993069 632.12.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 0.71 59.0 5.20e-01 95.2% 93.7%
3219497 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.69 46.0 3.86e-01 81.0% 41.4%
3903431 101.35.1.29 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DEK_C 0.67 45.0 3.97e-01 71.4% 48.3%
4974395 601.7.1.34 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 0.67 53.0 4.16e-01 95.2% 40.0%
3866248 4163.1.1.5 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Use1 0.66 54.0 4.67e-01 97.6% 100.0%
4076369 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.65 50.0 3.03e-01 85.7% 48.8%
3390993 601.7.1.21 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › NICE-3 0.64 54.0 4.26e-01 100.0% 93.7%
3704169 3285.1.1.0 ↗ alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain 0.64 50.0 3.26e-01 100.0% 75.3%
3882320 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.64 45.0 4.00e-01 76.2% 51.7%
3737296 192.2.1.18 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.62 44.0 3.02e-01 76.2% 23.8%
3991948 2007.1.6.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › ELFV_dehydrog_N 0.61 49.0 3.17e-01 90.5% 29.5%
4066690 633.12.1.0 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.60 43.0 3.42e-01 83.3% 57.0%
3230949 103.4.1.1 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX 0.58 48.0 4.02e-01 95.2% 90.7%
4445312 3812.1.1.0 ↗ alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE 0.53 43.0 4.08e-01 88.1% 84.0%
2822545 101.1.8.3 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I,Topo_C_assoc 0.53 43.0 3.92e-01 90.5% 75.4%
3487611 101.1.8.3 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I,Topo_C_assoc 0.52 44.0 3.72e-01 100.0% 57.3%