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MK422450.1__QBQ71976.1__X__00084
Bact-VirMK422450.1__QBQ71976.1__X__00084
Identity
- Accession:
- MK422450 ↗
- Kingdom:
- phage
Quality
76.4
mean pLDDT
Taxonomy
TaxID: 2510467
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-78
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06649.18 best | DUF1161 | 70.2 | 2.10e-19 | 96.4% | 100.0% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 49.0 | 4.28e-01 | 96.4% | 49.4% |
| 4mtlA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.67 | 56.0 | 3.91e-01 | 100.0% | 81.2% |
| 4lecA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 53.0 | 3.72e-01 | 100.0% | 81.2% |
| 2k78A00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 47.0 | 3.59e-01 | 80.4% | 61.9% |
| 4h05B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 52.0 | 4.57e-01 | 100.0% | 98.9% |
| 2fyiC01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.62 | 49.0 | 3.91e-01 | 92.9% | 55.9% |
| 4mypA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 48.0 | 3.75e-01 | 87.5% | 43.0% |
| 3sz6A00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 48.0 | 3.77e-01 | 87.5% | 44.8% |
| 1g1cA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 35.0 | 2.99e-01 | 100.0% | 34.7% |
| 5z0uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 46.0 | 3.57e-01 | 89.3% | 50.8% |
| 1k3xA01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.57 | 49.0 | 3.88e-01 | 100.0% | 72.2% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 38.0 | 3.55e-01 | 98.2% | 52.0% |
| 3aawA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.57 | 44.0 | 3.33e-01 | 92.9% | 59.4% |
| 4feuF01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 43.0 | 3.98e-01 | 83.9% | 98.6% |
| 6v55A03 | 2.60.220.50 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.57 | 36.0 | 2.61e-01 | 100.0% | 21.7% |
| 4wiqA02 | 3.30.70.1040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dystroglycan, domain 2 | 0.55 | 46.0 | 3.68e-01 | 100.0% | 48.8% |
| 5hb5B00 | 3.30.1610.10 | Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Peptidase S59, nucleoporin | 0.55 | 41.0 | 3.10e-01 | 80.4% | 78.6% |
| 4yo1A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 44.0 | 3.74e-01 | 87.5% | 56.2% |
| 7ocxC01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 35.0 | 3.29e-01 | 98.2% | 48.7% |
| 4i43B02 | 3.30.43.40 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain | 0.54 | 36.0 | 2.95e-01 | 82.1% | 35.1% |
| 1wgyA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 42.0 | 3.90e-01 | 92.9% | 98.7% |
| 3zpgA02 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.52 | 42.0 | 2.99e-01 | 100.0% | 82.9% |
| 3fzgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 3.04e-01 | 100.0% | 84.7% |
| 2e9wA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 33.0 | 2.85e-01 | 100.0% | 38.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3628694 | 864.1.1.3 ↗ | a+b two layers › DLC › DLC › DLC › Ground-like | 0.71 | 61.0 | 5.81e-01 | 100.0% | 83.1% |
| 3927036 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.68 | 59.0 | 5.68e-01 | 100.0% | 84.6% |
| 5015532 | 304.3.1.11 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MNHE | 0.67 | 40.0 | 3.80e-01 | 98.2% | 48.5% |
| 3618395 | 864.1.1.3 ↗ | a+b two layers › DLC › DLC › DLC › Ground-like | 0.63 | 53.0 | 4.91e-01 | 100.0% | 73.0% |
| 3872751 | 3448.1.1.0 ↗ | beta duplicates or obligate multimers › Multivesicular body subunit 12B MABP domain › Multivesicular body subunit 12B MABP domain › Multivesicular body subunit 12B MABP domain | 0.62 | 54.0 | 4.05e-01 | 100.0% | 79.0% |
| 4034167 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.60 | 47.0 | 3.88e-01 | 91.1% | 61.7% |
| 4133168 | 304.44.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › PriA_C | 0.60 | 40.0 | 3.41e-01 | 71.4% | 64.8% |
| 5070720 | 205.1.1.33 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_10 | 0.59 | 49.0 | 4.08e-01 | 100.0% | 92.7% |
| 4981929 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.58 | 45.0 | 3.07e-01 | 87.5% | 38.7% |
| 4946951 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.58 | 47.0 | 3.36e-01 | 100.0% | 98.1% |
| 5021015 | 11.1.1.130 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I42 | 0.57 | 37.0 | 3.36e-01 | 100.0% | 46.8% |
| 3518733 | 3504.2.1.1 ↗ | beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco | 0.57 | 48.0 | 3.60e-01 | 100.0% | 56.6% |
| 4971081 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.56 | 36.0 | 3.20e-01 | 98.2% | 41.2% |
| 4473719 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.56 | 35.0 | 3.05e-01 | 100.0% | 37.9% |
| 3561531 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.56 | 34.0 | 2.77e-01 | 100.0% | 29.6% |
| 3577274 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.55 | 34.0 | 2.88e-01 | 100.0% | 35.8% |
| 3646748 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.54 | 44.0 | 3.63e-01 | 100.0% | 84.2% |
| 3346945 | 4955.1.1.1 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_7 | 0.53 | 47.0 | 3.58e-01 | 100.0% | 48.5% |
| 3559659 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.53 | 32.0 | 2.64e-01 | 100.0% | 29.6% |
| 4857754 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.51 | 36.0 | 3.05e-01 | 75.0% | 52.9% |
| 4574535 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.51 | 37.0 | 2.74e-01 | 83.9% | 73.7% |
| 4946235 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.50 | 40.0 | 3.38e-01 | 87.5% | 86.3% |
| 5012279 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.50 | 44.0 | 3.36e-01 | 100.0% | 50.4% |
| 3291483 | 304.121.1.0 ↗ | a+b two layers › Alpha-beta plaits › SP0830-like › SP0830-like | 0.50 | 37.0 | 3.29e-01 | 82.1% | 55.3% |