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MK422451.1__QBP27491.1__X__00045
Bact-VirMK422451.1__QBP27491.1__X__00045
Identity
- Accession:
- MK422451 ↗
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Taxonomy
TaxID: 2510466
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-170
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20247.4 best | DUF6602 | 90.1 | 1.10e-25 | 62.5% | 97.1% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dvoA00 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.76 | 71.0 | 5.52e-01 | 98.8% | 80.5% |
| 1knvB00 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.76 | 68.0 | 5.60e-01 | 95.8% | 86.6% |
| 1fiuA00 | 3.40.50.10010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Type-2 restriction enzyme NgoMIV | 0.75 | 71.0 | 5.82e-01 | 100.0% | 95.8% |
| 1cfrA00 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.75 | 67.0 | 5.58e-01 | 95.2% | 88.0% |
| 3bm3A00 | 3.40.91.80 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.71 | 67.0 | 5.67e-01 | 100.0% | 79.5% |
| 1a79A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.69 | 42.0 | 5.31e-01 | 76.2% | 100.0% |
| 4ldaB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 42.0 | 4.77e-01 | 84.5% | 84.3% |
| 1dcfA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 45.0 | 5.00e-01 | 98.8% | 89.5% |
| 1to6A01 | 3.40.50.10350 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycerate kinase; domain 1 | 0.63 | 45.0 | 4.90e-01 | 89.9% | 87.3% |
| 4da2A02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 47.0 | 4.90e-01 | 83.3% | 98.7% |
| 1i5eA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 52.0 | 4.81e-01 | 95.2% | 86.5% |
| 5i45A00 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.58 | 34.0 | 3.30e-01 | 82.1% | 49.2% |
| 4rz2B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 46.0 | 3.99e-01 | 85.1% | 89.8% |
| 7e6iA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 44.0 | 4.39e-01 | 82.1% | 96.0% |
| 5lnmA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 43.0 | 4.56e-01 | 99.4% | 90.7% |
| 1z2aA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 42.0 | 4.31e-01 | 95.2% | 81.7% |
| 1bmtA02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.55 | 45.0 | 4.65e-01 | 99.4% | 91.8% |
| 1spxA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 43.0 | 3.85e-01 | 83.3% | 92.0% |
| 2q0xA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 43.0 | 3.62e-01 | 85.1% | 84.0% |
| 1byuB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 43.0 | 3.97e-01 | 85.1% | 85.6% |
| 1ez4B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 41.0 | 4.35e-01 | 83.3% | 92.5% |
| 2pk3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 41.0 | 3.81e-01 | 82.7% | 92.2% |
| 1eucA02 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.53 | 41.0 | 4.10e-01 | 83.3% | 79.4% |
| 7bv3A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 42.0 | 3.68e-01 | 85.1% | 93.4% |
| 2z3vA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 31.0 | 3.38e-01 | 88.7% | 70.1% |
| 6b6lA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 39.0 | 3.39e-01 | 78.6% | 66.0% |
| 3vywA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 44.0 | 3.99e-01 | 95.2% | 86.0% |
| 1lt7B00 | 3.20.20.330 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain | 0.50 | 44.0 | 3.58e-01 | 94.6% | 78.7% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4175832 | 2008.1.1.136 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF6602 | 0.86 | 83.0 | 7.30e-01 | 100.0% | 81.7% |
| 4946340 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.85 | 81.0 | 7.06e-01 | 100.0% | 74.6% |
| 149562 | 2008.1.1.26 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Bse634I | 0.76 | 69.0 | 5.66e-01 | 95.8% | 86.9% |
| 168681 | 2008.1.1.26 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Bse634I | 0.76 | 71.0 | 5.51e-01 | 98.8% | 80.8% |
| 11015 | 2008.1.1.35 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NgoMIV_restric | 0.75 | 71.0 | 5.82e-01 | 100.0% | 95.8% |
| 5026939 | 2008.1.1.5 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C | 0.75 | 47.0 | 5.56e-01 | 86.3% | 91.3% |
| 4970825 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 61.0 | 6.42e-01 | 83.9% | 94.0% |
| 3279630 | 2008.1.1.35 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NgoMIV_restric | 0.73 | 67.0 | 5.70e-01 | 96.4% | 95.7% |
| 2491403 | 2008.1.1.47 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_Bpu10I | 0.72 | 68.0 | 5.63e-01 | 100.0% | 73.4% |
| 5035528 | 2008.1.1.5 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C | 0.72 | 45.0 | 5.12e-01 | 81.0% | 83.2% |
| 4989887 | 2008.1.1.220 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 | 0.71 | 51.0 | 5.84e-01 | 85.1% | 98.4% |
| 2491402 | 2008.1.1.47 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_Bpu10I | 0.70 | 66.0 | 5.65e-01 | 100.0% | 76.4% |
| 4958431 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.69 | 45.0 | 5.25e-01 | 79.2% | 93.9% |
| 3279726 | 2008.6.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains | 0.66 | 54.0 | 5.16e-01 | 97.6% | 74.7% |
| 4927057 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 48.0 | 5.40e-01 | 90.5% | 96.9% |
| 3102571 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 53.0 | 5.70e-01 | 85.7% | 97.9% |
| 5009806 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 54.0 | 5.08e-01 | 88.7% | 95.6% |
| 3736568 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 46.0 | 4.76e-01 | 84.5% | 79.4% |
| 4991248 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 56.0 | 5.19e-01 | 92.9% | 95.6% |
| 5017560 | 2007.1.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding | 0.63 | 42.0 | 4.96e-01 | 85.1% | 98.3% |
| 5043877 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 45.0 | 5.03e-01 | 80.4% | 100.0% |
| 4999072 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.58 | 36.0 | 4.05e-01 | 89.3% | 79.2% |
| 4444433 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 46.0 | 4.48e-01 | 85.1% | 86.8% |
| None | — | 0.57 | 46.0 | 4.05e-01 | 84.5% | 93.0% | |
| 3398303 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.57 | 45.0 | 4.54e-01 | 97.6% | 84.2% |
| 4175296 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 45.0 | 4.11e-01 | 85.1% | 78.2% |
| 5052080 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.56 | 45.0 | 4.41e-01 | 85.1% | 83.3% |
| 5053003 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.55 | 44.0 | 4.38e-01 | 94.6% | 80.6% |
| 4522770 | 2007.19.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Glycerate kinase I (Pfam 02595) domain I › Glycerate kinase I (Pfam 02595) domain I › Gly_kinase | 0.55 | 44.0 | 4.55e-01 | 90.5% | 90.3% |
| 5069206 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.54 | 44.0 | 4.19e-01 | 85.1% | 79.3% |
| 3596438 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.53 | 43.0 | 3.88e-01 | 85.1% | 76.4% |
| 3705688 | 2003.1.6.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin | 0.53 | 43.0 | 3.72e-01 | 84.5% | 91.8% |
| 3699668 | 2004.1.1.164 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc | 0.53 | 43.0 | 3.67e-01 | 85.1% | 61.5% |
| 5040666 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.53 | 38.0 | 3.03e-01 | 85.7% | 36.2% |
| 3262787 | 2006.1.6.14 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › vWA-TerF-like | 0.53 | 43.0 | 4.08e-01 | 86.3% | 82.5% |
| 5083237 | 2007.2.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › FMN_red | 0.53 | 42.0 | 4.10e-01 | 85.1% | 93.2% |
| 4938576 | 2003.6.1.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK | 0.52 | 44.0 | 3.37e-01 | 91.1% | 68.5% |
| 3703373 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 36.0 | 3.30e-01 | 98.2% | 52.9% |
| 5006168 | 2003.1.6.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like | 0.51 | 41.0 | 4.15e-01 | 84.5% | 89.1% |
| 4104604 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.51 | 42.0 | 4.10e-01 | 88.7% | 85.3% |
D2
high
residues 185-247
D3
medium
residues 173-183_248-263_308-359
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bf6A02 | 2.40.220.10 | Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 | 0.63 | 37.0 | 3.97e-01 | 93.7% | 68.2% |
| 1s7mA03 | 2.20.25.140 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 24.0 | 3.52e-01 | 84.8% | 92.9% |
| 3o27B00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.57 | 34.0 | 3.85e-01 | 92.4% | 80.7% |
| 1b35B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 41.0 | 2.92e-01 | 78.5% | 59.6% |
| 3up6A02 | 2.60.40.3380 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 43.0 | 3.58e-01 | 89.9% | 96.2% |
| 2ecfA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.53 | 47.0 | 2.96e-01 | 100.0% | 30.2% |
| 3wgtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 37.0 | 2.89e-01 | 82.3% | 97.5% |
| 4uhvA02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.50 | 36.0 | 3.49e-01 | 77.2% | 96.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4888882 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.58 | 34.0 | 2.59e-01 | 94.9% | 23.0% |
| 3475708 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.55 | 27.0 | 3.41e-01 | 83.5% | 79.5% |
| 3845616 | 2004.1.1.118 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 | 0.52 | 39.0 | 2.73e-01 | 79.7% | 75.8% |