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MK422452.1__QBP27549.1__X__00010

Bact-Vir

MK422452.1__QBP27549.1__X__00010

Identity

Accession:
MK422452 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-102
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 34.0 4.16e-01 86.1% 77.3%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 33.0 3.98e-01 73.3% 74.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 32.0 3.87e-01 89.1% 75.4%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 34.0 4.40e-01 84.2% 100.0%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 36.0 4.25e-01 78.2% 93.9%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 37.0 4.23e-01 75.2% 87.7%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 38.0 4.24e-01 90.1% 93.2%
3db2B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 42.0 3.32e-01 77.2% 84.7%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 37.0 4.33e-01 92.1% 100.0%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 34.0 4.12e-01 83.2% 100.0%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 35.0 4.11e-01 90.1% 97.0%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 33.0 4.12e-01 87.1% 100.0%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 34.0 4.01e-01 79.2% 96.9%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.54 33.0 4.06e-01 90.1% 98.4%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 34.0 3.90e-01 83.2% 95.5%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 34.0 4.04e-01 75.2% 98.5%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 35.0 3.89e-01 89.1% 88.5%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 36.0 3.98e-01 84.2% 96.1%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 43.0 3.73e-01 97.0% 91.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3214162 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.79 45.0 5.61e-01 70.3% 93.3%
3947959 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 67.0 6.74e-01 98.0% 98.0%
3694693 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.74 47.0 5.78e-01 74.3% 100.0%
2512682 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 40.0 5.15e-01 70.3% 96.4%
3228213 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.73 44.0 5.38e-01 72.3% 93.8%
3941152 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 46.0 5.65e-01 77.2% 100.0%
3930846 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 49.0 5.78e-01 86.1% 100.0%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 34.0 4.15e-01 79.2% 81.5%
3198039 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 42.0 4.41e-01 100.0% 76.6%
3208258 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 54.0 4.75e-01 100.0% 86.0%
319225 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.59 37.0 4.20e-01 89.1% 85.1%
4413401 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.58 43.0 3.59e-01 77.2% 92.9%
1094905 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.57 39.0 4.46e-01 94.1% 100.0%
659 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.57 38.0 4.24e-01 90.1% 93.2%
3842884 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.57 36.0 4.15e-01 87.1% 95.6%
3896688 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 34.0 4.08e-01 89.1% 98.3%
3912274 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 35.0 4.06e-01 75.2% 90.0%
3911547 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.55 37.0 3.97e-01 76.2% 80.0%
3588456 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.55 38.0 3.32e-01 72.3% 93.5%
3894564 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.55 36.0 3.96e-01 82.2% 81.9%
5053804 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.54 40.0 3.17e-01 77.2% 85.9%
4091533 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.53 36.0 4.21e-01 80.2% 98.6%
3891033 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.52 34.0 3.84e-01 86.1% 90.4%
3899072 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.51 34.0 3.81e-01 84.2% 95.7%
3214694 4.1.1.331 beta barrels › SH3 › SH3 › SH3 › DUF4708 0.51 39.0 3.92e-01 87.1% 78.1%
3782681 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.51 36.0 3.55e-01 89.1% 68.2%
D2 high residues 115-166_203-303
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.65 26.0 3.09e-01 80.4% 51.0%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 35.0 4.08e-01 77.1% 74.5%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 39.0 4.17e-01 73.9% 70.0%
1jogA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 41.0 4.31e-01 81.0% 76.3%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 33.0 3.88e-01 77.1% 79.2%
1oahA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 42.0 4.35e-01 100.0% 78.2%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 29.0 4.13e-01 74.5% 100.0%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.58 39.0 3.92e-01 99.3% 66.2%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 36.0 4.30e-01 73.2% 92.2%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 38.0 4.21e-01 100.0% 83.6%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.57 39.0 4.16e-01 82.4% 78.9%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.57 33.0 3.54e-01 77.1% 63.0%
4jioA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.57 48.0 4.74e-01 88.9% 91.3%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.56 38.0 4.21e-01 81.7% 86.9%
2l6hA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 38.0 3.88e-01 87.6% 69.5%
3dyjA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.55 38.0 3.76e-01 84.3% 65.7%
2x0cA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.55 42.0 4.02e-01 99.3% 69.1%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 35.0 3.61e-01 94.1% 65.3%
3dyjA02 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.53 36.0 3.64e-01 81.7% 68.2%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 37.0 3.23e-01 70.6% 71.3%
2bl2A00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.53 40.0 4.03e-01 90.8% 77.6%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 37.0 4.06e-01 83.0% 90.9%
6o7uc01 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.52 40.0 3.78e-01 90.2% 65.3%
3tulB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 39.0 4.18e-01 79.7% 92.5%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.52 41.0 3.57e-01 83.0% 86.6%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.51 34.0 3.63e-01 77.1% 78.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3465357 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.67 37.0 4.15e-01 85.0% 69.6%
4033697 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.66 44.0 5.18e-01 92.8% 100.0%
1019380 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.64 32.0 3.71e-01 82.4% 64.8%
3943034 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.64 37.0 4.01e-01 81.0% 67.2%
162404 603.1.1.6 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.64 39.0 4.17e-01 73.9% 70.0%
3348885 3937.1.1.13 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › TRAM_LAG1_CLN8 0.63 48.0 4.08e-01 87.6% 49.0%
4944676 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.63 45.0 5.01e-01 84.3% 96.5%
3746251 633.21.1.23 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.62 47.0 4.63e-01 99.3% 75.0%
3384541 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.61 42.0 4.22e-01 96.7% 69.0%
3489761 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.61 51.0 4.48e-01 89.5% 95.6%
4647093 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 36.0 3.87e-01 82.4% 65.9%
4011946 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 42.0 4.46e-01 82.4% 80.7%
3825046 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.60 42.0 4.36e-01 98.7% 76.6%
3271160 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 43.0 3.85e-01 75.8% 92.7%
4945171 1075.5.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.59 37.0 3.36e-01 100.0% 45.2%
3221996 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.59 44.0 4.45e-01 88.9% 78.7%
3740490 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.59 48.0 4.19e-01 86.9% 88.3%
3623074 4177.2.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain 0.59 49.0 3.91e-01 88.9% 65.7%
3473142 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 35.0 3.70e-01 75.8% 65.7%
5021548 3562.1.1.0 alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 0.57 45.0 4.71e-01 85.6% 92.1%
3398787 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.56 45.0 4.49e-01 90.2% 81.9%
3851394 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.56 36.0 3.90e-01 76.5% 76.2%
5052630 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.56 38.0 3.82e-01 83.0% 67.7%
3234201 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.56 36.0 3.94e-01 76.5% 79.2%
3756 601.20.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipophorin-III › Apolipophorin-III 0.55 43.0 4.35e-01 81.7% 100.0%
3337031 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 37.0 3.55e-01 77.1% 57.8%
4136919 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 40.0 3.75e-01 75.2% 77.3%
3603460 109.4.1.1877 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, ANAPC3, TPR_8, TPR_16 0.54 43.0 3.31e-01 86.9% 39.4%
3746348 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 48.0 3.66e-01 100.0% 96.0%
4959549 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.53 39.0 3.69e-01 86.9% 61.6%
3488340 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.53 36.0 4.04e-01 77.8% 91.3%
3537261 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 38.0 3.11e-01 73.2% 87.1%
3907423 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.53 39.0 3.70e-01 86.9% 63.6%
4615969 150.8.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.53 37.0 3.74e-01 72.5% 82.5%
3267351 5001.1.1.32 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a 0.53 41.0 3.36e-01 100.0% 42.3%
3991276 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.52 43.0 3.57e-01 88.2% 69.8%
3882635 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 33.0 3.62e-01 75.8% 80.0%
3836003 3684.1.1.2 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.51 40.0 3.69e-01 90.2% 62.4%
3962324 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.51 41.0 3.81e-01 87.6% 84.0%