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MK422455.1__QBP27743.1__X__00058

Bact-Vir

MK422455.1__QBP27743.1__X__00058

Identity

Accession:
MK422455 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 129-176
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3799656 160.1.1.0 alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase 0.55 47.0 4.23e-01 95.8% 69.2%
D2 medium residues 1-55
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g1nA02 3.30.2160.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.57 39.0 3.58e-01 74.5% 75.0%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.54 41.0 2.69e-01 81.8% 23.9%
1txgA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 37.0 2.67e-01 78.2% 81.7%
8p5sA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 41.0 2.83e-01 100.0% 34.7%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944361 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.88 80.0 4.56e-01 100.0% 11.0%
3516246 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.58 39.0 3.37e-01 72.7% 95.8%
5001109 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.55 38.0 2.29e-01 74.5% 52.4%
None 0.54 45.0 2.52e-01 100.0% 42.1%
3652056 377.1.1.12 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 0.54 37.0 2.66e-01 72.7% 61.1%
4443044 2004.1.1.1014 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27228 0.54 38.0 2.50e-01 81.8% 51.0%
3631486 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 2.70e-01 98.2% 29.1%
3209327 109.4.1.621 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 0.51 40.0 2.37e-01 98.2% 17.4%
5000985 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.50 39.0 2.89e-01 98.2% 53.3%
D3 medium residues 56-126
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2honB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.95 84.0 5.45e-01 100.0% 24.7%
3u1nB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.84 77.0 4.87e-01 100.0% 22.0%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.67 51.0 4.29e-01 84.5% 83.6%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.63 49.0 4.04e-01 85.9% 80.1%
1tedA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.63 41.0 3.29e-01 91.5% 32.2%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 44.0 3.84e-01 74.6% 88.7%
2qh5B00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.61 52.0 3.63e-01 100.0% 79.3%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.59 51.0 3.33e-01 100.0% 61.0%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.39e-01 87.3% 98.9%
7nmqA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.59 47.0 3.01e-01 95.8% 18.0%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.67e-01 85.9% 67.9%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 38.0 3.03e-01 91.5% 31.4%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.58 46.0 4.24e-01 100.0% 66.3%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.56 47.0 2.97e-01 100.0% 29.4%
3pf7B00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.55 47.0 2.90e-01 95.8% 28.9%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.48e-01 85.9% 70.0%
3sfvB01 3.30.450.390 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 38.0 3.07e-01 73.2% 97.2%
1ub4C00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.54 27.0 2.72e-01 76.1% 42.7%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.53 42.0 3.30e-01 85.9% 73.7%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.53 27.0 3.04e-01 93.0% 60.0%
5wzoA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.53 46.0 3.93e-01 100.0% 82.9%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.53 45.0 4.19e-01 100.0% 81.9%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.53 44.0 3.13e-01 94.4% 44.5%
2ckwA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 37.0 3.13e-01 100.0% 44.8%
1knvB00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.52 41.0 2.82e-01 90.1% 49.1%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.29e-01 74.6% 99.0%
2fm8B00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 46.0 3.82e-01 100.0% 80.8%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 34.0 2.65e-01 90.1% 32.0%
6i7eA01 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 40.0 3.14e-01 90.1% 62.3%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.50 42.0 3.69e-01 94.4% 75.9%
1darA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 2.77e-01 88.7% 35.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944361 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 1.00 97.0 5.60e-01 100.0% 14.2%
3604550 131.1.1.5 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc_2 0.95 89.0 5.35e-01 100.0% 18.2%
4558880 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.94 89.0 5.28e-01 100.0% 17.6%
4418033 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.94 88.0 5.26e-01 100.0% 17.4%
4955511 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.90 83.0 4.86e-01 100.0% 14.6%
5077355 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.90 84.0 5.01e-01 100.0% 17.6%
5068105 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.89 83.0 4.97e-01 100.0% 17.1%
4945879 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.87 80.0 4.80e-01 100.0% 17.0%
1118688 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.86 79.0 4.69e-01 100.0% 14.8%
1108429 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.86 79.0 4.67e-01 100.0% 15.0%
4526572 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.86 79.0 4.64e-01 100.0% 14.5%
3707996 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.82 75.0 4.47e-01 100.0% 15.4%
3946654 517.2.1.0 beta barrels › CBF-like › TraF › TraF 0.69 50.0 3.33e-01 76.1% 22.5%
4593130 601.7.1.40 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.69 47.0 3.06e-01 71.8% 17.0%
4022379 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.68 58.0 4.66e-01 100.0% 84.0%
3381691 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.68 58.0 3.85e-01 100.0% 64.7%
4076057 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.67 58.0 3.82e-01 100.0% 62.3%
3878697 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.66 58.0 3.81e-01 100.0% 72.6%
3859690 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.66 57.0 3.77e-01 100.0% 62.8%
3587362 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.65 51.0 4.12e-01 85.9% 69.8%
4159140 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.65 56.0 3.43e-01 100.0% 40.2%
3261682 601.23.1.1 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.64 57.0 3.73e-01 100.0% 63.2%
3923908 133.1.1.1 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.62 52.0 3.51e-01 94.4% 37.5%
3789210 601.23.1.1 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.62 52.0 3.48e-01 100.0% 62.2%
3512133 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.62 44.0 2.97e-01 76.1% 41.7%
5041715 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.61 44.0 3.78e-01 74.6% 87.3%
4951774 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 3.90e-01 80.3% 98.3%
3781291 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 43.0 3.84e-01 76.1% 99.0%
3782440 109.4.1.526 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc 0.59 41.0 2.74e-01 73.2% 19.4%
3614763 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 47.0 3.94e-01 87.3% 96.7%
3643228 633.21.1.18 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.58 49.0 3.91e-01 100.0% 80.4%
4950303 101.1.2.751 alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.57 40.0 3.60e-01 98.6% 50.5%
3198423 5000.6.1.0 alpha arrays › Toxins' membrane translocation domains › Tethering factor for nuclear proteasome cut8 › Tethering factor for nuclear proteasome cut8 0.57 39.0 2.82e-01 71.8% 26.2%
5083210 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.57 38.0 3.34e-01 70.4% 78.2%
3288303 5051.1.1.3 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SSF 0.57 49.0 2.99e-01 100.0% 83.3%
4573100 2484.1.1.206 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70, FGGY_C 0.56 46.0 3.44e-01 91.5% 62.1%
5044199 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.56 42.0 2.96e-01 83.1% 70.1%
5028212 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.56 48.0 3.88e-01 100.0% 93.9%
4236657 633.21.1.18 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.55 46.0 3.73e-01 100.0% 60.0%
3541292 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.50e-01 76.1% 68.6%
3980132 823.1.1.1 a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › gpW 0.54 34.0 3.82e-01 100.0% 81.8%
3359387 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.54 46.0 2.87e-01 100.0% 83.3%
4025349 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.54 38.0 3.19e-01 76.1% 47.7%
3589156 268.2.1.1 a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr 0.54 46.0 3.33e-01 100.0% 62.7%
4385210 633.21.1.18 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.53 45.0 3.45e-01 100.0% 53.5%
3479755 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 45.0 2.76e-01 98.6% 16.7%
5069558 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 31.0 3.54e-01 83.1% 88.9%
3292855 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.52 35.0 3.00e-01 70.4% 94.4%
5061454 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 44.0 3.50e-01 97.2% 81.2%
3787921 604.5.1.36 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › UPF0220 0.52 40.0 3.29e-01 90.1% 72.3%
5075344 1075.1.1.3 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.51 43.0 3.03e-01 100.0% 56.5%
3968281 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.51 39.0 2.80e-01 97.2% 26.0%
5058624 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.50 39.0 3.19e-01 85.9% 67.1%
4968841 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 42.0 2.84e-01 100.0% 30.5%