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MK433269.1__QAY17190.1__SEA_MADAMATO_72__00072

Bact-Vir

MK433269.1__QAY17190.1__SEA_MADAMATO_72__00072

Identity

Accession:
MK433269 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rimavirus› Streptomyces_phage_Madamato

TaxID: 2510517

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-86
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tedA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 44.0 3.77e-01 72.3% 100.0%
5reqB03 1.10.196.20 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 1 › 0.61 31.0 3.73e-01 78.5% 74.4%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 47.0 3.50e-01 96.9% 60.7%
1au7A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 39.0 3.84e-01 73.8% 91.7%
4m0mA04 1.20.1270.440 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 42.0 3.59e-01 95.4% 65.0%
3qvmB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 2.91e-01 96.9% 73.6%
6vhyA02 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.51 33.0 3.28e-01 95.4% 61.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960847 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.77 34.0 2.67e-01 93.8% 21.5%
3554386 3755.3.1.309 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Mis12 0.69 40.0 3.40e-01 73.8% 37.0%
4931927 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 50.0 4.46e-01 98.5% 55.8%
3636036 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 39.0 4.07e-01 75.4% 63.3%
5058510 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.58 39.0 3.36e-01 70.8% 79.1%
4086063 309.1.1.4 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.56 45.0 3.36e-01 93.8% 59.5%
3950478 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.56 38.0 3.73e-01 70.8% 95.7%
4936403 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.54 45.0 2.91e-01 93.8% 95.9%
3697469 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.53 44.0 3.30e-01 100.0% 96.8%
3592549 309.1.1.0 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.53 43.0 3.07e-01 95.4% 59.6%
1183435 309.1.1.4 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.53 41.0 3.08e-01 90.8% 61.7%
3934380 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 34.0 3.39e-01 75.4% 62.9%
3285506 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.52 37.0 3.27e-01 78.5% 70.5%
4505595 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.51 44.0 3.84e-01 96.9% 70.0%