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MK433578.1__QBQ71990.1__X__00013

Bact-Vir

MK433578.1__QBQ71990.1__X__00013

Identity

Accession:
MK433578 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 57.0 4.73e-01 94.4% 49.5%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 4.20e-01 85.2% 35.4%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 4.05e-01 83.3% 34.1%
2v7fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 62.0 4.53e-01 98.1% 66.2%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 4.06e-01 88.9% 33.3%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.70 47.0 3.99e-01 70.4% 44.0%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 3.83e-01 83.3% 28.8%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 4.09e-01 85.2% 38.7%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 3.93e-01 85.2% 34.1%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.19e-01 72.2% 51.3%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 4.57e-01 90.7% 56.0%
2fbkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 3.50e-01 88.9% 27.6%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 3.82e-01 85.2% 35.8%
4xviA01 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.65 44.0 3.22e-01 88.9% 26.4%
3kfwX01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.41e-01 92.6% 58.7%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.19e-01 85.2% 56.9%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 4.00e-01 92.6% 69.2%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.64 43.0 3.41e-01 88.9% 34.5%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 3.76e-01 85.2% 39.4%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.63 44.0 3.28e-01 96.3% 28.5%
4x0qA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.62 43.0 3.15e-01 88.9% 27.8%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.61 47.0 3.38e-01 90.7% 28.2%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.61 47.0 3.42e-01 92.6% 29.5%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.35e-01 87.0% 100.0%
1ti6B02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 43.0 4.28e-01 75.9% 86.0%
4id8A00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 39.0 3.75e-01 70.4% 81.5%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 41.0 3.44e-01 83.3% 41.7%
7febA03 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.57 36.0 3.09e-01 70.4% 38.0%
1epwA01 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.56 42.0 2.53e-01 85.2% 50.7%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.56 37.0 2.84e-01 81.5% 25.9%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.56 43.0 2.61e-01 87.0% 51.9%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.54 46.0 3.06e-01 100.0% 75.0%
7qjnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 42.0 2.66e-01 83.3% 99.3%
2vqmA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.54 47.0 2.86e-01 100.0% 78.5%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.54 42.0 2.51e-01 85.2% 49.0%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 39.0 3.28e-01 87.0% 87.7%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.52 37.0 3.19e-01 83.3% 41.7%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.52 38.0 2.81e-01 77.8% 35.6%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.51 43.0 2.89e-01 98.1% 68.1%
1u8vB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 41.0 2.80e-01 90.7% 65.3%
2v4jB01 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 2.77e-01 74.1% 33.3%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.51 32.0 2.57e-01 70.4% 28.9%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.50 35.0 2.80e-01 75.9% 76.8%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4933456 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.76 57.0 4.95e-01 83.3% 53.8%
4948782 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.76 53.0 4.74e-01 79.6% 53.3%
5031624 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.76 54.0 4.55e-01 81.5% 45.6%
4946594 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 58.0 4.73e-01 85.2% 45.0%
4961252 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 59.0 4.95e-01 85.2% 51.7%
5051539 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.73 56.0 4.39e-01 94.4% 39.1%
4947701 101.1.2.882 alpha arrays › HTH › HTH › winged helix domain › FeoA 0.73 56.0 4.63e-01 85.2% 46.0%
5017852 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 56.0 5.01e-01 83.3% 60.0%
4926938 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 54.0 4.73e-01 81.5% 53.8%
4987460 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.72 54.0 4.78e-01 83.3% 55.0%
5030872 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 55.0 4.15e-01 83.3% 36.2%
5073726 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 53.0 4.61e-01 81.5% 57.6%
4976799 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 4.51e-01 83.3% 47.4%
5077394 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.71 53.0 4.17e-01 87.0% 38.3%
5079289 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 4.40e-01 85.2% 44.8%
4987454 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.70 51.0 4.37e-01 81.5% 47.8%
4945461 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 4.45e-01 83.3% 47.4%
4928633 101.1.2.18 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.69 58.0 4.67e-01 94.4% 57.1%
3943344 183.1.1.0 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.69 53.0 3.96e-01 88.9% 32.9%
5062173 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 48.0 3.78e-01 83.3% 34.8%
3283039 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 3.73e-01 94.4% 31.0%
3358714 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 3.02e-01 96.3% 11.1%
4985937 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 4.19e-01 96.3% 41.7%
3654151 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.66 43.0 3.06e-01 88.9% 22.4%
3883903 101.1.2.507 alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.65 47.0 3.26e-01 92.6% 21.5%
5034431 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.65 49.0 3.72e-01 88.9% 32.9%
3384077 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.65 50.0 4.33e-01 96.3% 52.2%
5074949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 4.68e-01 96.3% 57.8%
4528478 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.64 40.0 4.07e-01 74.1% 63.6%
4967060 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 4.45e-01 88.9% 61.3%
4927049 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 54.0 4.50e-01 98.1% 89.0%
4167856 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.64 52.0 4.56e-01 96.3% 60.0%
5072661 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 4.47e-01 94.4% 61.3%
4965087 101.1.2.909 alpha arrays › HTH › HTH › winged helix domain › DUF5797 0.63 47.0 4.38e-01 87.0% 62.9%
3729923 101.1.2.86 alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.63 53.0 3.86e-01 98.1% 33.1%
3929910 101.1.2.507 alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.63 53.0 3.87e-01 94.4% 32.9%
5024301 101.1.2.404 alpha arrays › HTH › HTH › winged helix domain › DUF505 0.63 47.0 4.14e-01 83.3% 52.9%
5036096 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 48.0 3.88e-01 94.4% 41.8%
4970959 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 43.0 4.00e-01 74.1% 55.7%
3320650 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.62 47.0 3.98e-01 94.4% 47.0%
5055185 4120.1.1.0 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.61 46.0 4.52e-01 88.9% 75.0%
3837892 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 2.90e-01 94.4% 13.9%
3446330 176.1.1.0 alpha arrays › Annexin › Annexin › Annexin 0.61 45.0 4.06e-01 90.7% 55.3%
5019931 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 3.68e-01 94.4% 38.7%
3822958 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.60 49.0 3.50e-01 90.7% 36.4%
None 0.60 41.0 2.65e-01 75.9% 21.0%
5028902 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.59 45.0 4.04e-01 83.3% 61.3%
3680183 2003.1.5.54 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.59 41.0 2.57e-01 75.9% 58.8%
4931635 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.59 43.0 3.86e-01 87.0% 53.6%
4026891 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.58 43.0 3.75e-01 87.0% 50.0%
3885052 145.1.1.4 alpha arrays › F-box domain › F-box domain › F-box domain › ASXH 0.58 40.0 3.39e-01 75.9% 42.1%
2994214 2003.1.5.54 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.58 40.0 2.89e-01 75.9% 35.2%
3357775 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.58 42.0 3.65e-01 88.9% 47.8%
3839545 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.56 43.0 2.56e-01 88.9% 11.6%
4968901 304.22.1.0 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.55 36.0 3.47e-01 70.4% 56.9%
4860672 2003.1.5.54 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.54 38.0 2.47e-01 75.9% 55.6%
4195219 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.54 39.0 3.31e-01 88.9% 44.0%
3975516 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.54 46.0 3.80e-01 100.0% 83.8%
2995032 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.52 34.0 2.85e-01 87.0% 33.0%
3974773 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.53e-01 96.3% 50.5%
3284779 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.52 45.0 3.49e-01 100.0% 74.4%
3611141 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.52 35.0 3.14e-01 81.5% 47.5%
3614292 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.51 38.0 2.88e-01 90.7% 84.1%