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MK433579.1__QBP27801.1__X__00006

Bact-Vir

MK433579.1__QBP27801.1__X__00006

Identity

Accession:
MK433579 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-69
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6qv3A05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 69.0 5.55e-01 100.0% 59.1%
3bhqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.78 60.0 3.90e-01 83.3% 29.7%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.77 54.0 4.54e-01 85.4% 44.3%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.76 59.0 4.69e-01 91.7% 44.0%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.75 66.0 4.24e-01 100.0% 31.7%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.74 58.0 5.19e-01 89.6% 62.0%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.73 58.0 5.05e-01 89.6% 57.3%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.71 55.0 4.34e-01 83.3% 43.2%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 55.0 4.01e-01 83.3% 52.1%
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.70 62.0 4.95e-01 100.0% 75.8%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.69 55.0 4.19e-01 85.4% 41.1%
1tf5A04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.69 56.0 3.89e-01 97.9% 91.2%
3g27A01 3.30.50.20 Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › prophage-derive protein ybcO 0.68 57.0 5.17e-01 100.0% 68.2%
2hydA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.68 56.0 3.47e-01 100.0% 15.5%
5k29A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.68 58.0 4.53e-01 93.8% 48.5%
1dmhA00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.67 55.0 3.37e-01 100.0% 14.2%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 53.0 4.61e-01 85.4% 62.0%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.67 55.0 4.20e-01 89.6% 41.5%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.66 54.0 5.18e-01 100.0% 83.3%
4ei7A02 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.66 57.0 3.68e-01 100.0% 38.9%
2q5zB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.66 49.0 3.93e-01 79.2% 42.6%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.66 52.0 3.34e-01 85.4% 20.1%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.66 51.0 4.17e-01 83.3% 48.2%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.66 56.0 4.63e-01 95.8% 79.3%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 55.0 4.60e-01 91.7% 59.5%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.64 52.0 4.83e-01 100.0% 95.4%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.63 51.0 4.76e-01 95.8% 85.9%
4griA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.63 46.0 4.51e-01 91.7% 75.5%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.63 47.0 4.41e-01 83.3% 65.6%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.63 52.0 3.86e-01 91.7% 38.8%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 55.0 4.42e-01 100.0% 87.2%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.63 51.0 3.59e-01 91.7% 92.8%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.62 53.0 4.03e-01 95.8% 65.8%
3ic9A02 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.62 55.0 4.84e-01 100.0% 75.7%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 49.0 3.19e-01 100.0% 90.2%
1vk0A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 54.0 3.56e-01 97.9% 47.5%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 54.0 3.83e-01 100.0% 69.5%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.62 47.0 3.76e-01 85.4% 85.3%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 49.0 3.55e-01 100.0% 29.7%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 42.0 4.19e-01 100.0% 71.7%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.60 53.0 4.72e-01 95.8% 69.7%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 52.0 4.38e-01 93.8% 75.6%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.59 50.0 4.89e-01 100.0% 86.3%
3q23A08 1.20.140.110 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.59 49.0 3.55e-01 100.0% 46.1%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 40.0 3.55e-01 70.8% 54.7%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.59 53.0 3.55e-01 100.0% 71.3%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 45.0 3.56e-01 91.7% 39.8%
3d85C00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 50.0 3.65e-01 100.0% 80.5%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.57 43.0 3.61e-01 85.4% 46.1%
3gzfD00 1.10.150.420 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus 0.57 50.0 4.08e-01 100.0% 80.2%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.57 52.0 4.19e-01 100.0% 86.2%
3t38A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 47.0 3.58e-01 100.0% 96.9%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 43.0 3.77e-01 83.3% 60.8%
3eheA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.52 41.0 3.36e-01 89.6% 88.5%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.52 42.0 2.65e-01 100.0% 68.0%
2x1lB02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.51 42.0 3.75e-01 100.0% 86.8%
2v4jA01 6.10.140.1420 Special › Helix non-globular › Helix Hairpins › 0.51 45.0 4.09e-01 97.9% 82.5%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621595 4336.2.1.3 alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › COMPASS-Shg1 0.78 59.0 5.03e-01 93.8% 50.0%
3512559 192.1.1.37 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 0.77 63.0 5.90e-01 100.0% 78.5%
3314379 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.77 62.0 5.59e-01 93.8% 71.4%
3807993 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.77 67.0 4.09e-01 97.9% 30.5%
3164721 1078.1.1.0 extended segments › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit 0.75 64.0 5.31e-01 100.0% 54.4%
4946898 375.1.9.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.75 54.0 4.63e-01 83.3% 49.3%
4976411 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 62.0 3.58e-01 100.0% 19.0%
4610257 6130.1.1.0 alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain 0.73 63.0 5.75e-01 100.0% 75.4%
3924041 605.1.1.212 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › 2TM_P5A-ATPase 0.73 57.0 5.16e-01 85.4% 66.2%
3811948 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.72 57.0 5.20e-01 100.0% 64.3%
3750377 605.1.1.254 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MRVI1 0.71 57.0 4.71e-01 85.4% 53.8%
3697477 7581.1.1.7 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Ketoacyl-synt_C 0.71 60.0 3.63e-01 100.0% 14.4%
3327321 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.71 52.0 4.38e-01 91.7% 44.4%
3328260 3443.1.1.0 alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain 0.71 52.0 5.57e-01 81.2% 95.0%
3734711 7581.1.1.3 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C 0.71 60.0 3.30e-01 100.0% 6.4%
3270778 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.70 59.0 4.80e-01 100.0% 49.0%
5083838 3896.1.1.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.70 60.0 3.92e-01 100.0% 24.3%
3388445 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.68 50.0 4.47e-01 83.3% 56.9%
3513849 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.68 56.0 4.25e-01 100.0% 37.7%
3547013 621.1.1.8 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GVIN1 0.68 59.0 4.51e-01 100.0% 44.3%
3906696 101.1.2.725 alpha arrays › HTH › HTH › winged helix domain › TAPR1-like 0.66 53.0 3.89e-01 85.4% 35.8%
4947024 4993.1.1.0 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.66 54.0 4.42e-01 100.0% 47.4%
4016292 192.2.1.18 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.66 56.0 3.97e-01 91.7% 34.8%
5072135 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.66 53.0 3.66e-01 100.0% 24.6%
3989579 2004.1.1.430 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.66 53.0 2.97e-01 87.5% 44.9%
4961961 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.66 51.0 4.36e-01 85.4% 53.3%
3201572 4177.1.1.7 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Pil1 0.65 51.0 3.18e-01 89.6% 16.1%
3518379 3502.1.1.1 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.65 48.0 4.70e-01 89.6% 74.5%
4055322 3560.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Med8 0.65 52.0 3.45e-01 93.8% 22.7%
3552184 1045.1.1.1 alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Mre11_DNA_bind 0.65 50.0 4.03e-01 100.0% 40.0%
3394875 109.4.1.102 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › WAPL 0.64 53.0 2.96e-01 91.7% 8.0%
3620383 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.64 54.0 3.18e-01 95.8% 54.5%
3462860 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.63 56.0 3.23e-01 100.0% 57.8%
3508963 614.1.1.1 alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 0.62 49.0 3.94e-01 89.6% 44.0%
3172350 4177.1.1.7 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Pil1 0.62 51.0 3.35e-01 91.7% 21.0%
5041194 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.62 56.0 3.88e-01 100.0% 32.3%
4800170 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.62 54.0 4.20e-01 100.0% 61.0%
3807996 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.62 48.0 4.43e-01 87.5% 66.2%
3277087 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.62 51.0 4.00e-01 100.0% 45.3%
5060491 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.61 51.0 3.77e-01 91.7% 39.2%
3897328 2003.1.5.111 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Rsm22 0.61 48.0 3.00e-01 100.0% 13.4%
169936 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 49.0 3.59e-01 100.0% 30.8%
3169906 109.4.1.1391 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec10_HB, Sec10_N 0.59 45.0 2.60e-01 93.8% 7.9%
3498924 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 51.0 3.67e-01 100.0% 90.7%
3785684 109.4.1.437 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_HEAT_N 0.57 49.0 3.03e-01 100.0% 16.5%
3248074 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 49.0 3.41e-01 100.0% 48.4%
4462922 109.4.1.2 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.53 48.0 3.06e-01 95.8% 28.2%